PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103330001
Common NameGSBRNA2T00103330001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 189aa    MW: 20868.2 Da    PI: 6.0265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103330001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-183282155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s y+G+r+++ +grW+A Irdp     +  r++lg+f tae+Aa+a++  +k+l+g
  GSBRNA2T00103330001 32 SEYRGIRRRP-WGRWAADIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRLRG 82
                         569*******.**********72....46*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-223291IPR016177DNA-binding domain
PROSITE profilePS5103223.6833390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-303391IPR001471AP2/ERF domain
SMARTSM003801.5E-363396IPR001471AP2/ERF domain
PfamPF008471.7E-113382IPR001471AP2/ERF domain
PRINTSPR003671.8E-113445IPR001471AP2/ERF domain
CDDcd000182.89E-303491No hitNo description
PRINTSPR003671.8E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MCGGAVISDY INVTAGKPSW RRDDKNKSSS SSEYRGIRRR PWGRWAADIR DPIKGVRVWL  60
GTFNTAEDAA RAYDLEAKRL RGVKAKLNFP NESPASSSRK RKASSPPPTQ RRPQVQKIEE  120
KHEGNDLGGG CSYDCEGDVD GLFSDELLAF ENETECFLQT PFMEGGNCGS LTSLSSLLDE  180
VNVMDLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212990163ATERF1
3gcc_A2e-212990163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.231152e-65root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103330001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895751e-62AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701258.11e-99ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T52e-51ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3D0397e-91A0A0D3D039_BRAOL; Uncharacterized protein
STRINGBo6g115850.11e-91(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.32e-52ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]