PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00103357001

Common Name

GSBRNA2T00103357001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 596aa MW: 65842.2 Da PI: 5.6366

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00103357001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.4e-09	501	549	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v ++G g W+ I r +Rt ++k++w+++l GSBRNA2T00103357001 501 AWTLSEVTTLVEGVSKYGAGKWSEIKRFSFssySHRTSVDLKDKWRNLL 549 7*************************999999*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.282	494	553	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-13	496	555	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-9	498	551	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.3E-16	500	559	IPR009057	Homeodomain-like
CDD	cd11660	1.24E-20	500	550	No hit	No description
Pfam	PF13921	1.3E-6	502	557	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MGTVVGTVED CREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV 60 NETDMHSASD ACQSLRYLPT EGSPFRLSQL EETSEVINLG LLRADNVEPS TDQVNSQPEY 120 SEEFLQKAQQ DESLVMVSTP PDANIQFRNE NNMFDEDQVH HEPLPFSSDV QNGCDVNQSN 180 TVEPSSPKET ALPAAAASQK PDFALVRGEI CLDNLPIKAL QETFRATFGR ETTVKDKTWL 240 KRRITMGLTK SFDVPTTNLT IKDNKLVGIK DKSNDVSDDV RATNVKEAPS SSAYHVNGHS 300 KDASAHSLGV NHYWATEDLS CEERAAKRVR KPTRRYIEEL SETDDKSVVI SKDQRLSEKS 360 EVRSMSVSSG KRVTVTRVVP LGGSEVEVPY VSHVRRSRPR ENFMALMECH TSCLEAKATG 420 GESNLLNSEV VSPGSVVKSA SGPIQKEVSH NNTNEENMLT EADQDVEADH VDSSGNSSDD 480 YNNTGAPMMQ GGGVRRKHHR AWTLSEVTTL VEGVSKYGAG KWSEIKRFSF SSYSHRTSVD 540 LKDKWRNLLR ASFAQSPSNN MGSFKKHGSM HIPVDILLQV RELAEKQSLV PPNHR*

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MGTVVGTVED CREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHSASD ACQSLRYLPT EGSPFRLSQL EETSEVINLG LLRADNVEPS TDQVNSQPEY  120
SEEFLQKAQQ DESLVMVSTP PDANIQFRNE NNMFDEDQVH HEPLPFSSDV QNGCDVNQSN  180
TVEPSSPKET ALPAAAASQK PDFALVRGEI CLDNLPIKAL QETFRATFGR ETTVKDKTWL  240
KRRITMGLTK SFDVPTTNLT IKDNKLVGIK DKSNDVSDDV RATNVKEAPS SSAYHVNGHS  300
KDASAHSLGV NHYWATEDLS CEERAAKRVR KPTRRYIEEL SETDDKSVVI SKDQRLSEKS  360
EVRSMSVSSG KRVTVTRVVP LGGSEVEVPY VSHVRRSRPR ENFMALMECH TSCLEAKATG  420
GESNLLNSEV VSPGSVVKSA SGPIQKEVSH NNTNEENMLT EADQDVEADH VDSSGNSSDD  480
YNNTGAPMMQ GGGVRRKHHR AWTLSEVTTL VEGVSKYGAG KWSEIKRFSF SSYSHRTSVD  540
LKDKWRNLLR ASFAQSPSNN MGSFKKHGSM HIPVDILLQV RELAEKQSLV PPNHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00103357001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189507	0.0	AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBank	AC189607	0.0	AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013702564.1	0.0	uncharacterized protein BNAC06G33800D isoform X1
Refseq	XP_013702565.1	0.0	uncharacterized protein BNAC06G33800D isoform X1
TrEMBL	M4DHR7	0.0	M4DHR7_BRARP; Uncharacterized protein
STRING	Bra016044.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4364	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	0.0	TRF-like 6

Link Out ? help Back to Top
Entrez Gene	106406443

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]