PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00103373001

Common Name

GSBRNA2T00103373001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 241aa MW: 27265.3 Da PI: 10.1882

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00103373001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.1	5.2e-32	35	90	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 e ++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF GSBRNA2T00103373001 35 ESVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 90 789************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.6E-37	32	93	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.759	33	93	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-23	36	58	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-26	36	90	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	38	58	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.7E-23	67	90	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRFQVSSSIL QTCNPQMVGM VPGRVALPVE ITETESVFVN AKQYHAIMRR RQQRAKLEAQ 60 NKLIKARKPY LHESRHVHAL KRPRGSGGRF LNTKKLLQES QQAAAKEQER DKSVQQAMRQ 120 TCLDSKLICC STTKTVVAQP LLALTSHLFP KVLISSEKLN SSFRVSQQLR LTELCLFMVS 180 PMTCMEVGTC TISLSISETL DLWCCFMFPT KRGSHPWLLL LLVLLLAVTC YFSISLYLLF 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	35	95	3	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13309	1e-174	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00103373001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189507	0.0	AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBank	AC189607	0.0	AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3D075	1e-134	A0A0D3D075_BRAOL; Uncharacterized protein
STRING	Bo6g116210.1	1e-134	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-53	nuclear factor Y, subunit A3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]