PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103597001
Common NameGSBRNA2T00103597001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 22234.5 Da    PI: 4.1094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103597001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-192272155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+ykGVr +k +g+Wv+eIr p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  GSBRNA2T00103597001 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTPEKAARAFDAAQFCLRG 72
                         89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.79E-292282No hitNo description
SuperFamilySSF541712.88E-202281IPR016177DNA-binding domain
PfamPF008472.4E-122272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-282381IPR001471AP2/ERF domain
SMARTSM003801.5E-282386IPR001471AP2/ERF domain
PROSITE profilePS5103221.5752380IPR001471AP2/ERF domain
PRINTSPR003675.5E-102435IPR001471AP2/ERF domain
PRINTSPR003675.5E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKKAMKEEE EEAEMRNSSM QSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSFDTPEKAA  60
RAFDAAQFCL RGCQSGFNFP DNPPSISGGR SLSPPEIREA AARYANAQDD GILITTGEEE  120
SVLSETRPES PSTTSVSEAD TSLDCDLSFL DTLPNDFGMF SVFDDFSDGF SGDQFTEVLP  180
VEDYGDVIFD ESLFLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1521881280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103597001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590474.11e-131PREDICTED: ethylene-responsive transcription factor ERF018
SwissprotQ9S7L54e-88ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0D3D0R71e-130A0A0D3D0R7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GE721e-130A0A3P6GE72_BRAOL; Uncharacterized protein
STRINGBo6g119120.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]