PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104112001
Common NameGSBRNA2T00104112001, LOC106424546
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 245aa    MW: 26990 Da    PI: 4.6596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-1960110155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  GSBRNA2T00104112001  60 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 110
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1360110IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2161119IPR016177DNA-binding domain
PROSITE profilePS5103223.4261118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3261119IPR001471AP2/ERF domain
SMARTSM003801.8E-3561124IPR001471AP2/ERF domain
CDDcd000182.56E-3262120No hitNo description
PRINTSPR003672.5E-106273IPR001471AP2/ERF domain
PRINTSPR003672.5E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVASASESTS VEEYYSRQVE RVTQLPNSAS DLVVDSSKAE QNENSKKAKR VRDSGKPAYP  60
VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG ASAILNFPEL  120
ADSFPRPVSL NPRDIQTAAL KAAHMVPTTS FTSSSSSSTS SLESLVMVMD LSNTESEELD  180
EIVELPSLGA NYDVHAATFG NEFVFSDSVD YCLYPPPWGQ WSEDSYGISP SFNQGLSWDQ  240
FDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17621191573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104112001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638141e-124AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project).
GenBankAL1638151e-124AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project).
GenBankAY5608511e-124AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds.
GenBankAY9401601e-124AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds.
GenBankCP0026881e-124CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720765.11e-180dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-116DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3P6E3S81e-178A0A3P6E3S8_BRAOL; Uncharacterized protein
STRINGBo9g170060.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-113ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]