PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104454001
Common NameGSBRNA2T00104454001, LOC106429511
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 538aa    MW: 58955.7 Da    PI: 7.1255
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104454001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31210267260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d+++++i+Y+g+H+h+k
  GSBRNA2T00104454001 210 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFETSH-DGRITDIIYKGTHDHPK 267
                          8***************************************9.***************85 PP
2WRKY107.28e-34367425159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00104454001 367 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 425
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905204268IPR003657WRKY domain
SuperFamilySSF1182902.62E-24207268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-26207268IPR003657WRKY domain
SMARTSM007747.3E-33209267IPR003657WRKY domain
PfamPF031061.6E-23210266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37352427IPR003657WRKY domain
SuperFamilySSF1182901.57E-29359427IPR003657WRKY domain
PROSITE profilePS5081138.629362427IPR003657WRKY domain
SMARTSM007743.1E-39367426IPR003657WRKY domain
PfamPF031064.2E-26368425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDLPQANNDR EELQVDCSAT VDPTARHNSA GGGGGGGGAR YKLMSPAMLP ISRSTTNITI  60
PSGLSPTSFL ESPVFISNIK PEPSPTTGSL FKPRPVHVSS SSYTGRAFHQ NTFTEHKSSE  120
FEFRPPASNM VYAELDKHKR EPPVQFQGQG HGSSHSPEAT ASSSEPSRPT PPVQTPPTSS  180
DIPAGSDQEE SVQTSQNESR GSAPPTVLAD DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC  240
EVKKLFETSH DGRITDIIYK GTHDHPKPQP GRRNSGGVGM VAQEERVEKG VYNLSQAIEQ  300
TGNPEVATTT NDGGDVAASN RNKDDPEDDD PYTKRRRLDG NMEITPLVKP IREPRVVVQT  360
LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTAPGCPV RKHVERASHD PKAVITTYEG  420
KHNHDVPTSK SGSSNHHEIQ PRFRPPEETD TISLNLGVGI SSNGPNENQQ LLSQTHPNGV  480
GFRFVHAAPV STYYASMNQY GPRETQSETQ NDDISSLNHS SSYPYPHNNI GRIQTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38208427877Probable WRKY transcription factor 4
2lex_A7e-38208427877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333337KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71580.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104454001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123930.0EU912393.1 Brassica napus WRKY20-1 transcription factor (WRKY20-1) mRNA, complete cds.
GenBankKC2465700.0KC246570.1 Brassica napus WRKY transcription factor 20.1 (WRKY20.1) mRNA, complete cds.
GenBankKC2465710.0KC246571.1 Brassica napus WRKY transcription factor 20.2 (WRKY20.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725716.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3P6FR440.0A0A3P6FR44_BRAOL; Uncharacterized protein (Fragment)
STRINGBo8g051360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]