PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104461001
Common NameGSBRNA2T00104461001, LOC106429478
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 155aa    MW: 17086.1 Da    PI: 8.8968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104461001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-1681127151
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +++kGVr ++ +g+W AeI+dps    r r +lg+f ta++Aa+a++ a+ 
  GSBRNA2T00104461001  81 KKHKGVRKRP-SGKWSAEIWDPSA---RERRWLGTFPTAKMAARAYDDAAA 127
                          589*******.7*********954...4999****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-1581117No hitNo description
SuperFamilySSF541711.44E-1582133IPR016177DNA-binding domain
PROSITE profilePS5103219.00682143IPR001471AP2/ERF domain
PfamPF008475.9E-982126IPR001471AP2/ERF domain
SMARTSM003801.5E-2182145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-2182134IPR001471AP2/ERF domain
PRINTSPR003676.9E-78394IPR001471AP2/ERF domain
PRINTSPR003676.9E-7105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDYSEIDPSY DQKPPYLTRD QEHVIMVSAL RQVISNVGSD TTSSSNFEAL QPLDAGPCSL  60
CGITGCYGCA FPQHREISKE KKHKGVRKRP SGKWSAEIWD PSARERRWLG TFPTAKMAAR  120
AYDDAAAGLV RRKASRGGTR NGKEAYTKTT VEDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104461001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895871e-136AC189587.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725679.11e-113ethylene-responsive transcription factor ERF120
SwissprotQ9SK671e-64EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A3P6FC611e-112A0A3P6FC61_BRAOL; Uncharacterized protein
STRINGBo8g051400.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.15e-64ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]