PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104728001
Common NameGSBRNA2T00104728001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 486aa    MW: 53627.4 Da    PI: 8.3331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0596118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00104728001  96 FVCEICNKGFQRDQNLQLHRRGH 118
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-695118No hitNo description
Gene3DG3DSA:3.30.160.601.6E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121717.7E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM0035599138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-6168193No hitNo description
SMARTSM00355180173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV  60
PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY KCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH  240
QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNQQQTGDQI INYHHHGVPP  300
WLAPQPQDLT SSNPNPSNGG GGGGGGGLFS LAASPAMSAT ALLQKAAQMG STRTTPLPPT  360
TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA SGFNHHHGGG EAFDNTFSGL  420
FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI LSFAGLGNCI NDAASDQLHP  480
KPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-31169230364Zinc finger protein JACKDAW
5b3h_F4e-31169230364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104728001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575470.10.0protein indeterminate-domain 11-like isoform X1
RefseqXP_022575471.10.0protein indeterminate-domain 11-like isoform X1
RefseqXP_022575472.10.0protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1J3JPP20.0A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11
STRINGBra027394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]