PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105485001

Common Name

GSBRNA2T00105485001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 400aa MW: 45900.2 Da PI: 7.1075

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105485001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.4	8e-28	79	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k+ykk k++++++ +s +++y++++e GSBRNA2T00105485001 79 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHHDRGN---VSAKMSYYKEIE 160 ******************************************************************95...77889**998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-4	69	140	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.072	71	135	IPR017877	Myb-like domain
SMART	SM00717	0.0095	75	137	IPR001005	SANT/Myb domain
CDD	cd12203	5.32E-31	77	142	No hit	No description
Pfam	PF13837	1.1E-20	78	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MFVSDKPRPN DFYKDDTTNS STAVRNMIID GDLQPHNHHP HHNHNHHHHN HLQPQQILLG 60 ESSGEDHEVK APKKRAETWV QDETRSLIMF RRGMDGLFNT SKSNKHLWEE ISAKMREKGF 120 DRSPTMCTDK WRNLLKEYKK AKHHDRGNVS AKMSYYKEIE DILRERSKKV TTQYSKSPNT 180 PPIAKVDSFM QFTDKGFDDP SISFGSVEGN CRPGLNLERS LDHDGHPLAI TTVDAVPANG 240 VPPWNWRETP GNAGGDAHGQ PFGGRVITVK FGDYTRRIGV DGTAEAIKET IRSAFSLRTR 300 RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDG GVAIRVCHYD ESNQLPVHTE EKIFYTEEDY 360 RDFLARRGWT YLQVDGFRNI DNMDDLQAGA VYRGVRERM*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MFVSDKPRPN DFYKDDTTNS STAVRNMIID GDLQPHNHHP HHNHNHHHHN HLQPQQILLG  60
ESSGEDHEVK APKKRAETWV QDETRSLIMF RRGMDGLFNT SKSNKHLWEE ISAKMREKGF  120
DRSPTMCTDK WRNLLKEYKK AKHHDRGNVS AKMSYYKEIE DILRERSKKV TTQYSKSPNT  180
PPIAKVDSFM QFTDKGFDDP SISFGSVEGN CRPGLNLERS LDHDGHPLAI TTVDAVPANG  240
VPPWNWRETP GNAGGDAHGQ PFGGRVITVK FGDYTRRIGV DGTAEAIKET IRSAFSLRTR  300
RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDG GVAIRVCHYD ESNQLPVHTE EKIFYTEEDY  360
RDFLARRGWT YLQVDGFRNI DNMDDLQAGA VYRGVRERM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-53	73	158	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105485001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013671780.1	0.0	trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3P5YE02	0.0	A0A3P5YE02_BRACM; Uncharacterized protein
STRING	Bra019721.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]