PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105654001

Common Name

GSBRNA2T00105654001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 309aa MW: 35207.7 Da PI: 9.8277

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105654001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.7	1.7e-23	40	126	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+ +si k+sk+q+++Kir+LK K ++k +++++++f l GSBRNA2T00105654001 40 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLL 120 78**********************************96369*************************.........45566789999 PP DUF573 92 skkiWg 97 sk+iWg GSBRNA2T00105654001 121 SKRIWG 126 999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-17	41	126	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVNTSPPSHI LRSRKSKSPG KHASKPSPPE PEHVTKKNSS SRIWNEEDEL TVLKGLVDYQ 60 AQKGIEPRSN WADFYRFLGG GSITGKFSKE QVLSKIRKLK AKLIASMQKG NTSQSEAFLL 120 SKRIWGLQNE SDQSANHAKS DEEMANHEPS NNEVTKADND ESSWAVRDAF ETMVSKGLSD 180 YQKKLQLEKL MNLGSGKRRE LSDEWNELCA EEVQLNIKRL KFSAMLAEAA KCDSVSYCLE 240 SQQKNKSQPP SSSSPKRKHE DDENVSYTEA IVRRRKQQKK YLIWNMKDVL LILKRGFRYN 300 SDWDIFYG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	275	KRKHEDDENVSYTEAIVRRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4572	0.0	flower\| leaf\| microspore\| microspore-derived embryo\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:18162594}.

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105654001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL163817	6e-32	AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBank	CP002688	6e-32	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593964.1	0.0	PREDICTED: uncharacterized protein LOC106302008 isoform X1
Swissprot	Q9ASZ1	5e-52	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	A0A0D3D5U0	0.0	A0A0D3D5U0_BRAOL; Uncharacterized protein
STRING	Bo7g043690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	5e-54	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]