PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00105754001
Common NameGSBRNA2T00105754001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 370aa    MW: 40781.8 Da    PI: 9.086
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00105754001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.8e-1819108272
             trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          Wt  e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r 
  GSBRNA2T00105754001  19 WTLTETMVLIEAKKMDDERRMRRSiglqapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108
                          **************666666665445555666666667777669999***************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6441194IPR017877Myb-like domain
PfamPF138379.2E-1418109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADQSGGLGL MREYRKGNWT LTETMVLIEA KKMDDERRMR RSIGLQAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGPSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE  180
TGMIQQQGLG FVPQHQMIQP RVLLPLPRPP PPPSQPLQPR TLLLPPPPQP SFHAQPILPT  240
VDSDTSEHSD TSPAKRRRTM PTTAAGTSGG GGGGNAEMEE GESVVAAALS RSASVIANAF  300
RESEERQDRR HKEVMSLKER RLKIEESNVE MNREGMSGLV EAINKLASSM FALASSTSSH  360
NNQHQGGPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00105754001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722669.10.0uncharacterized protein LOC106426504 isoform X2
TrEMBLA0A0D3D5M20.0A0A0D3D5M2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELZ10.0A0A3P6ELZ1_BRAOL; Uncharacterized protein
STRINGBo7g041030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-120Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]