PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105946001

Common Name

GSBRNA2T00105946001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 238aa MW: 27396.7 Da PI: 6.4499

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105946001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.5	1.3e-29	72	159	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p GSBRNA2T00105946001 72 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKESSGKWVITKFVKEHNHPLMP 159 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-27	72	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGHNEMGESS GQAMIEQDEE NHNEIGEHSG EEMTLEQDEK VDPDSIPLEV ADMADEPFVG 60 QEFESEAAAH GFYNAYATKV GFVIRVSKLS RSRHDGSPIG RQLVCNKEGY RLPSKRDKVI 120 RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE 180 LMQQLAAEKK RAATYKRHLE MLFDHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25417	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105946001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBank	AY143081	0.0	AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013699100.1	1e-178	protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_013699101.1	1e-178	protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A3P6GAJ3	1e-177	A0A3P6GAJ3_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra003377.1-P	1e-176	(Brassica rapa)
STRING	Bo6g076470.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-159	FAR1 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]