PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106016001
Common NameGSBRNA2T00106016001, LOC106452579
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 241aa    MW: 26421.6 Da    PI: 7.8714
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106016001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18160194135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  GSBRNA2T00106016001 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 194
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-832238IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.81E-14153216No hitNo description
SMARTSM004011.2E-15154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.754154190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-13158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-13159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.4E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDVYGLSSPD LLPIDDLLDF SNDEIFSSSS TIVSSATSSA ASSSENPFNF PSPASTSFHT  60
SPPPLTDFAH DLCVPSDDAA HLEWLSRFVD DSFSDYPANP LTMTVRPEMS FTGKPRSRRS  120
RATAPSTWAP TPEAELCHSV AKRKTTKKLE AAERGGARRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRFK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME LRRQKEQLES AVHLLPFQPQ  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.140870.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106016001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531960.0AK353196.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750183.11e-176GATA transcription factor 4
SwissprotO497431e-119GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A3P6FVM81e-175A0A3P6FVM8_BRAOL; GATA transcription factor
STRINGBo6g077140.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-102GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]