PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00106307001

Common Name

GSBRNA2T00106307001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 319aa MW: 35599 Da PI: 9.7371

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00106307001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25	5.4e-08	30	75	5	49
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW.vpaakr 49 + +C +CGn a+ C ++ C+ CC + C hv +a+k+ GSBRNA2T00106307001 30 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKGVaTSAEKT 75 569*******************************955430333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-4	32	75	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAGPSPSPSL TNNGLSATVT PPTNLRGRNK PKCIQCGNVA RSRCPFQSCK GCCSRAENPC 60 PIHVLKGVAT SAEKTAPSTP SSDHKASEGT PGSSTRFSSI RHLSSNFAQF NNLNATARQR 120 KPLTIKDAQA LNEWRFTKLK EYRDRNIEAE DEAFDRYLSN VSLLEEAFSL AFVPEEAAAS 180 ERNKEERAVL ELKLRLRSNS ARTESFKKRI NETIKAGLVK VQKRGGKSDD QDEVKRRIKR 240 RKWEEKTSAL NEIIDKLNKA RTEEDLKSCT ELKSKHYGQV SSSSTSEHNK IFPAYVRKVE 300 VCEDAFLQET GEQLQSFD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28377	0.0	leaf\| microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00106307001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584008.1	0.0	PREDICTED: uncharacterized protein LOC106292886
Refseq	XP_022571489.1	0.0	uncharacterized protein LOC111213925
TrEMBL	A0A0D3CGM6	0.0	A0A0D3CGM6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FBU7	0.0	A0A3P6FBU7_BRAOL; Uncharacterized protein
STRING	Bo5g086960.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-167

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]