PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106915001
Common NameGSBRNA2T00106915001, LOC106442697
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 170aa    MW: 18821.2 Da    PI: 6.3425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106915001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-063557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC++C+k+Fs +  L  H++ H
  GSBRNA2T00106915001 35 YKCKYCHKTFSKRQALGGHQNAH 57
                         9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-73363No hitNo description
PfamPF139121.8E-63557IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.5913562IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-53561IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDLNHPIDVD MLSSESSYAS DVSENDSELI EKLKYKCKYC HKTFSKRQAL GGHQNAHKME  60
RTITERQNHA MLTSMNQPYP NMYPYTIDGP TNLTMVNSQS QGTDQSLPIR GNPYQSVMAP  120
PQLYLSPTSP PPPPLCLNLR LAAGNSLQAQ AQPKEPSEDD LSLSLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106915001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739806.11e-122zinc finger protein ZAT11
TrEMBLA0A3P6DST81e-92A0A3P6DST8_BRAOL; Uncharacterized protein
STRINGBra009088.1-P4e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2370834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]