PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00106950001

Common Name

GSBRNA2T00106950001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 308aa MW: 35204.3 Da PI: 8.4222

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00106950001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.5	8.5e-14	33	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++a + rl g+l++++W+ev++++ + g ++ +qCk++++ l+k+yk++k+ + s +++fd+l+ GSBRNA2T00106950001 33 WTEDATATLLQAWGHRFVRLDFGNLRQNDWKEVADAVnssHCNGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 114 ***********************************6666667788999*************99986......57***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.1E-24	31	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
METTTPPPPP AKPQQPHSTV SHRQPTAGRE DWWTEDATAT LLQAWGHRFV RLDFGNLRQN 60 DWKEVADAVN SSHCNGRPKT DTQCKSRIDT LKKKYKAEKA KLSPSAWRFF DRLDVLIGPV 120 SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVARKHP RVEEGDLSEE 180 TACKELARTI VKLGEVYERI EGRKQKMMVE LEKQRMEVVK EIELQRMNML MEMQLELEKS 240 KNRKRGDGSG KSITPCLCVL SLISKSRCNL CENVMFCNQT SCRARGLQLG NNFVFKCLKQ 300 PKVHCCR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00106950001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189201	0.0	AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013611633.1	1e-147	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_013737866.1	1e-147	trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3EHL1	0.0	A0A0D3EHL1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EDP8	0.0	A0A3P6EDP8_BRAOL; Uncharacterized protein
STRING	Bo9g177060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4926	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	2e-89	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]