PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107040001
Common NameGSBRNA2T00107040001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14593.7 Da    PI: 8.0551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107040001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         ie+  +r++   kR +g++K AeEL +L d+++++  f  
  GSBRNA2T00107040001 11 IEDRKKRNIACQKRMKGLMKMAEELTILSDTKACLTFFNR 50
                         99*********************************88865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-13154IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.213149IPR002100Transcription factor, MADS-box
CDDcd002669.75E-17266No hitNo description
PRINTSPR004042.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-131156IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MARPKLKLAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAGPG  60
PCFRPMRRGG VYLMDKWFVD NPEVQKHGDG MTHMGSRFNL NMEPSNEDEE YMKTNEGESS  120
KSGGEDDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215RPKLKLAWIEDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107040001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668580.11e-45agamous-like MADS-box protein AGL80
RefseqXP_013668582.11e-45agamous-like MADS-box protein AGL80
TrEMBLA0A3P6ETG48e-46A0A3P6ETG4_BRAOL; Uncharacterized protein
STRINGBo9g176120.17e-43(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-13AGAMOUS-like 96
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]