PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107061001
Common NameGSBRNA2T00107061001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37729.1 Da    PI: 8.4822
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107061001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-18188242256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  GSBRNA2T00107061001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 242
                          678899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41188278192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  GSBRNA2T00107061001 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-A 276
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  GSBRNA2T00107061001 277 LK 278
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17172238IPR009057Homeodomain-like
SuperFamilySSF466893.76E-18179245IPR009057Homeodomain-like
PROSITE profilePS5007116.908184244IPR001356Homeobox domain
SMARTSM003892.5E-16186248IPR001356Homeobox domain
CDDcd000867.23E-16188245No hitNo description
PfamPF000462.3E-15188242IPR001356Homeobox domain
PROSITE patternPS000270219242IPR017970Homeobox, conserved site
PfamPF021832.8E-11244278IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.1E-26244287IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLNVLGF GGHRSLSSSS  60
SPSMEDEKDK NKRKLAPKAI DSDGFRVSSS VDPSLQLQLH FPWLPENSRQ GGRISGAATV  120
PEEEEEAALS MSVSPPDSVT SSFRLDFGIK SYGYERRNNK RDIENDEVER STSRASNEDN  180
DDDNGATRKK LRLSKDQSAF LEDSFKEHST LNPKQKIALA KQLNLRPRQV EVWFQNRRAR  240
TKLKQTEVDC EYLKRCCESL TEENRRLQKE VKELRALKTS SPFCMQLPAT TLTMCPSCER  300
VATSVSHPSS SATHNIDLSK SSFHSPLISV KPGPGKQVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192TRKKLRL
2236244RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107061001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606550.10.0PREDICTED: homeobox-leucine zipper protein HAT14
RefseqXP_013670853.10.0homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-173HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D3EH950.0A0A0D3EH95_BRAOL; Uncharacterized protein
STRINGBo9g175900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-161homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]