PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107075001

Common Name

GSBRNA2T00107075001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 750aa MW: 85839.9 Da PI: 8.3153

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107075001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.8	1.2e-28	85	139	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fve v++LGG+ kAtPk+il+lm + Lt+++vkSHLQkYR+ GSBRNA2T00107075001 85 KTRVKWTANLHDKFVESVNHLGGPMKATPKQILKLMRTHELTIYQVKSHLQKYRT 139 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.303	84	142	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.3E-23	85	140	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.85E-14	85	139	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-24	85	140	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-6	87	138	IPR001005	SANT/Myb domain
Pfam	PF02536	7.6E-7	337	467	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
SMART	SM00733	92	351	381	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
SMART	SM00733	4.6	386	417	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
SMART	SM00733	530	490	521	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
SMART	SM00733	620	607	637	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
Pfam	PF02536	5.2E-17	623	725	IPR003690	Transcription termination factor, mitochondrial/chloroplastic
SMART	SM00733	0.11	642	673	IPR003690	Transcription termination factor, mitochondrial/chloroplastic

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003690	Molecular Function	double-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MKFGRRHGSD DDHSSDNDHS SDDMCSEHVT HCCKCYDISQ IFSSDTRQST SLTKQSFECV 60 ETDISTEPSA RSSLASEFTN SPCIKTRVKW TANLHDKFVE SVNHLGGPMK ATPKQILKLM 120 RTHELTIYQV KSHLQKYRTQ KHVQNSIQGT SLKEEKIHLE GSGITEFIRL QDKVGQHLQE 180 QLEVSMTLVR NPSRFTTLLK RLSHLSVENP FTPLSSATQK PRSFATQRTR NGIRVTPTIR 240 KMAEEAMLDY FYSTRSLQYM VAESMSKNSP IFIENLLKKV SCVSASDINQ SITKHLRFHP 300 VNEFEPFLES SGLKPDEYTH LIPSGEIFLN ELLLENHRVL CYCGVDPKKI GKIFEEARDV 360 FGYETGVLAS KIKVYEDFGF SRLFLSKLIA CCPRMLVGDT DMELVRVVEK LRAIGIDSDW 420 VMKNLSEEVS YDWSSVHCAL TLLRVICNDE DELYALIKNH PRLIFESSGR WTLILSGFET 480 KLGLSARELY SLFQKLPQMQ VEKCVSNLRR CFLFLKEIDM EDDEIQKVFR SHSWWISSCT 540 LKKTSSLLVN LKAYKTRVCK VVKENPEEMK KWTMGSKVHP LPATEVYLDS KAMKTQFLLD 600 LGYVEGSEEM ERAGKSFRGR GSELKERFEV LVRFGLDEED VKEMVKASPN ILTQASDVLE 660 TKVRFLVTEL GYPLSTLVAF PSCLKFTLER MKVRFAMFAW LKARGKADPK LAVSTLLACS 720 DKDFARYFVS RHPDGPKHLE DLKKKQQLL*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MKFGRRHGSD DDHSSDNDHS SDDMCSEHVT HCCKCYDISQ IFSSDTRQST SLTKQSFECV  60
ETDISTEPSA RSSLASEFTN SPCIKTRVKW TANLHDKFVE SVNHLGGPMK ATPKQILKLM  120
RTHELTIYQV KSHLQKYRTQ KHVQNSIQGT SLKEEKIHLE GSGITEFIRL QDKVGQHLQE  180
QLEVSMTLVR NPSRFTTLLK RLSHLSVENP FTPLSSATQK PRSFATQRTR NGIRVTPTIR  240
KMAEEAMLDY FYSTRSLQYM VAESMSKNSP IFIENLLKKV SCVSASDINQ SITKHLRFHP  300
VNEFEPFLES SGLKPDEYTH LIPSGEIFLN ELLLENHRVL CYCGVDPKKI GKIFEEARDV  360
FGYETGVLAS KIKVYEDFGF SRLFLSKLIA CCPRMLVGDT DMELVRVVEK LRAIGIDSDW  420
VMKNLSEEVS YDWSSVHCAL TLLRVICNDE DELYALIKNH PRLIFESSGR WTLILSGFET  480
KLGLSARELY SLFQKLPQMQ VEKCVSNLRR CFLFLKEIDM EDDEIQKVFR SHSWWISSCT  540
LKKTSSLLVN LKAYKTRVCK VVKENPEEMK KWTMGSKVHP LPATEVYLDS KAMKTQFLLD  600
LGYVEGSEEM ERAGKSFRGR GSELKERFEV LVRFGLDEED VKEMVKASPN ILTQASDVLE  660
TKVRFLVTEL GYPLSTLVAF PSCLKFTLER MKVRFAMFAW LKARGKADPK LAVSTLLACS  720
DKDFARYFVS RHPDGPKHLE DLKKKQQLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	85	142	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107075001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022565459.1	0.0	transcription termination factor MTEF18, mitochondrial-like
TrEMBL	A0A3P6DS30	0.0	A0A3P6DS30_BRAOL; Uncharacterized protein
STRING	Bra009230.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5129	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	2e-23	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]