PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107392001
Common NameGSBRNA2T00107392001, LOC106390058
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 267aa    MW: 28997.6 Da    PI: 8.6945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107392001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034101123123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cgk F++   L  H  +H
  GSBRNA2T00107392001 101 HKCSVCGKAFPSYQALGGHKASH 123
                          79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.011101128IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-8101123No hitNo description
PfamPF139122.2E-13101124IPR007087Zinc finger, C2H2
SMARTSM003550.011101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-8153180No hitNo description
PROSITE profilePS501579.099158180IPR007087Zinc finger, C2H2
PfamPF139128.7E-14158182IPR007087Zinc finger, C2H2
SMARTSM003550.17158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MALEAMNCPT NSSSFTARED RNEPTDDLTN DAVFMEPWLK RKRSKRQRSG SPSSSPPRSR  60
PKSQIQDLAE EEYLALCLLM LANNHHQPKR RPQESTTKLS HKCSVCGKAF PSYQALGGHK  120
ASHRIKPPTT TADDDSTPPT IAVAHPTSTA IAPSGKIHEC SICHKVFPTG QALGGHKRCH  180
YEGTIGGGGG SKSVSQSGSV TSTVSEERSN RAFIDLNLPA LPELSLHHHN PVVDEEIQSP  240
LTGKKPLLLT DHDKASIKKE DFSLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845LKRKRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.75270.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, radicles, cotyledons, hypocotyls, leaf veins, stems, sepals, petals, stamens, placenta, funiculi and maturated seeds. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107392001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685896.10.0zinc finger protein AZF2
SwissprotQ9SSW21e-101AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A0D3CID61e-164A0A0D3CID6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8431e-164A0A3P6F843_BRAOL; Uncharacterized protein
STRINGBo5g113850.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-71zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]