PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107521001

Common Name

GSBRNA2T00107521001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 440aa MW: 48929.7 Da PI: 8.0622

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107521001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29	2.4e-09	275	329	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAt..PktilelmkvkgLtlehvkSHLQkYR 54 +rl Wt +L ++F ea+++LGG At ++++lm+ ++t ++++ +Q R GSBRNA2T00107521001 275 TRLFWTDQLKQAFNEAIQSLGGLYSATvtAEQVKKLMEDLDVTESQIANRIQNLR 329 69******************9998633789**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-8	274	330	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-7	276	331	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEEIDRAQTI PEKIAIIQGY LKKLEDGKKE RAEWRKQLEE KANRLQEQRN ALKDQRKAIE 60 DEKKQIEDLK KSDMDDDQKK AIAAQLKAVE DREKLLQSQE NATEDQVKEI EIQEKHAEDA 120 GSAQDAETIL LSTTLQNLVN ASPPLPPPAT TSPTVPSGFL PLTPSNPTAA TSSSGPSTSL 180 RLAPPAPSES SLPAAPTFPR SQTGASSFSS LQPPQQRIMP NPPESYLPRP PQHTSEIVLT 240 SPAFATLPIF PPRNISTQPL LVGPPTVPLG PRNATRLFWT DQLKQAFNEA IQSLGGLYSA 300 TVTAEQVKKL MEDLDVTESQ IANRIQNLRR KKHPRDDDGG EARLLRFWEV RNVKRGGSLS 360 GWICSWWMLT VGTDNLLKFT PLIRTDRFLT MFQATMMQVT ISSSHLLQYR ERLIAGTMFS 420 MSVDVSRCAQ SFRLTSLLC*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEEIDRAQTI PEKIAIIQGY LKKLEDGKKE RAEWRKQLEE KANRLQEQRN ALKDQRKAIE  60
DEKKQIEDLK KSDMDDDQKK AIAAQLKAVE DREKLLQSQE NATEDQVKEI EIQEKHAEDA  120
GSAQDAETIL LSTTLQNLVN ASPPLPPPAT TSPTVPSGFL PLTPSNPTAA TSSSGPSTSL  180
RLAPPAPSES SLPAAPTFPR SQTGASSFSS LQPPQQRIMP NPPESYLPRP PQHTSEIVLT  240
SPAFATLPIF PPRNISTQPL LVGPPTVPLG PRNATRLFWT DQLKQAFNEA IQSLGGLYSA  300
TVTAEQVKKL MEDLDVTESQ IANRIQNLRR KKHPRDDDGG EARLLRFWEV RNVKRGGSLS  360
GWICSWWMLT VGTDNLLKFT PLIRTDRFLT MFQATMMQVT ISSSHLLQYR ERLIAGTMFS  420
MSVDVSRCAQ SFRLTSLLC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107521001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232562	8e-66	AC232562.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH054E04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651851.1	0.0	stress response protein nst1
TrEMBL	A0A0D3CIL4	0.0	A0A0D3CIL4_BRAOL; Uncharacterized protein
STRING	Bo5g115620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23623	2	2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]