PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107566001

Common Name

GSBRNA2T00107566001, LOC106446858

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 208aa MW: 23610.7 Da PI: 5.7424

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107566001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.6e-16	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv +ps v ++ l++p +f+ g+ + s +tle++ g + ++kl ++ +++++l++GW+eF++a+ + eg f+ F ++g+s+f GSBRNA2T00107566001 30 FFKVVLPSTVKRNM-LMIPPRFVILQGS--TLSEFVTLETPVGFRRSIKL--KRIGEEIWLQGGWSEFAEAHSISEGHFLFFDYKGNSTF 114 89999999998876.******66664..48889***********..********************************9999 PP ..EEEEE- CS B3 91 elvvkvfr 98 v++f+ GSBRNA2T00107566001 115 --SVMIFN 120 ..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-23	23	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-21	25	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-14	28	120	No hit	No description
PROSITE profile	PS50863	12.238	29	122	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-17	30	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.6E-14	30	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MVTTRQTKAR VTTASHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE 60 FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFN 120 VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL 180 NDVDEINSIK LLEEEEGKRV FRGQQFF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.18469	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107566001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240102	1e-123	AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013744123.1	1e-152	B3 domain-containing protein At3g18960
Swissprot	Q84R27	6e-92	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	A0A3P6F1G9	1e-142	A0A3P6F1G9_BRAOL; Uncharacterized protein
STRING	Bra022374.1-P	1e-116	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	2e-94	B3 family protein

Link Out ? help Back to Top
Entrez Gene	106446858

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]