PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107662001

Common Name

GSBRNA2T00107662001, LOC106374936

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 172aa MW: 19900.9 Da PI: 10.5323

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107662001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	61.9	1.6e-19	4	96	2	100
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkg 89 F +yei++d++l+++isws++++sf++++++e f+kk+L+++F n++ F+ L++YgF +++ ++++ eF hk+ F +g GSBRNA2T00107662001 4 FHVAIYEIVDDPSLDSTISWSKSNKSFIIWNPKElFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKHyFVRG 85 77789***********************9655389999999885.799***************99.......**989* PP XXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrk 100 k ell+k++ + GSBRNA2T00107662001 86 KPELLKKMRLQ 96 ******98755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.8E-24	1	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.1E-20	2	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.99E-20	3	94	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.3E-5	4	27	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.3E-18	4	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-5	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MQQFHVAIYE IVDDPSLDST ISWSKSNKSF IIWNPKELFT KKILKRFFCC NLSQFITELD 60 TYGFVRIEGS DEQLEFGHKH YFVRGKPELL KKMRLQAAMN RMKKSAQKAK ARAEAEKNGS 120 VTVRREPRII INADDARMRY KQIFESSSSS SSSSSSIAKT PLENRFRHLR I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5553	0.0	flower\| microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107662001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013670309.1	1e-125	heat stress transcription factor A-4a
TrEMBL	A0A0D3A4F0	1e-111	A0A0D3A4F0_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6PTQ6	1e-111	A0A3N6PTQ6_BRACR; Uncharacterized protein
STRING	Bo1g021700.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	3e-25	HSF family protein

Link Out ? help Back to Top
Entrez Gene	106374936

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]