PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107676001
Common NameGSBRNA2T00107676001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1603aa    MW: 180252 Da    PI: 8.5094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107676001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15178279298
                          EEE-..-HHHHTT-EE-.-HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvl.pkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +  lt+ dv++ +rl +  +k a e+      +  ++  l++ede+g++W + ++y + s+ + +t+GW+++v++++Lk+gDfv F++d+
  GSBRNA2T00107676001 178 EICLTTIDVSNVDRLAVkANKDAGEYfllaTVVAGTDSLLRFEDEEGKTWLFGFSYLNVSQCCEFTQGWSSYVEEKQLKAGDFVSFQRDR 267
                          5566777777777775513444666677773334455689****************99999999***********************998 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                          +++ +l+++ ++
  GSBRNA2T00107676001 268 KDSSKLFIGCRK 279
                          877778877765 PP
2zf-CCCH22.42.2e-0715151537426
                           ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                           +lCr + rtG C  G++C+F H+
  GSBRNA2T00107676001 1515 SLCRSYVRTGNCAVGPSCSFDHP 1537
                           69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-19174282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-9176270No hitNo description
SMARTSM010195.2E-5177280IPR003340B3 DNA binding domain
PfamPF023621.4E-12178279IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-12210280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.574217281IPR003340B3 DNA binding domain
SMARTSM002555.6E-6322459IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522006.54E-12327462IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015824.1E-18332487IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501049.548370459IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.3006.0E-4475520IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525403.54E-39476742IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.2E-19499747IPR002182NB-ARC
PRINTSPR003646.0E-21516531No hitNo description
Gene3DG3DSA:3.40.50.3004.3E-7521649IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003646.0E-21592606No hitNo description
PRINTSPR003646.0E-21683697No hitNo description
SuperFamilySSF467851.63E-5719823IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520584.08E-338441086IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-278491086IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.8E-8906925IPR011713Leucine-rich repeat 3
PRINTSPR003646.0E-219951011No hitNo description
SuperFamilySSF520475.18E-1510161107No hitNo description
SuperFamilySSF520475.18E-1511511245No hitNo description
Gene3DG3DSA:3.80.10.104.2E-1311561254IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010311.44115111539IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-515151537IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-415151536IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1603 aa     Download sequence    Send to blast
MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST  60
SSFATLPDRT SFRLLAAGGD GELDRIYKSL GVSGPDDLAI SFDAWEASKM RSSSGIVNRF  120
QPQADVLSSG VDSLDRDNTG GVGRFFKEHA SEKASEKEHG EMNLNPNYHD DVREDLFEIC  180
LTTIDVSNVD RLAVKANKDA GEYFLLATVV AGTDSLLRFE DEEGKTWLFG FSYLNVSQCC  240
EFTQGWSSYV EEKQLKAGDF VSFQRDRKDS SKLFIGCRKS DESFPNPTSP GASIKTVEMR  300
ERLKGVETPF QPKLSEHSVT GSDPVLVIYC GDNQVSEEIY LISYIFNELC RRGFSPLRYD  360
MKKGTVTENQ KLLHISRVGI IIFSMNFAHF RECLDGFVAV MDHLKANELV LVPVFFKVRV  420
SDVRGQSGSF GRAFIRLRNS VKASEVLKWR AAMIELTSIS GYAYKKGDEV ILAKNIVRDV  480
CLPLSSETNM KLRGTRLSLE SILSLLNRSQ PSSPQIVGLW GMAGIGKTTI TREFFRTQAE  540
RYDVCYFLPD FHLMCQTKGL SYLRDDFFSK IFGAEKVFVD ACDTKLRFTR DRFLGKKVLI  600
VLDGVSSAKD AEILVGGFGW FSGGHTIILT SRNRQVLVQC NAKVIYEIEK LSKLESLHLC  660
CKFASKENCK GRMSLTSELV DYASGNPLAL RVLGLSIQNQ SMKDQKQHLR RLRQHPPVKI  720
LDAFKISFNG RDGDEKSIFL DLACFFRGED RDRVVKILDD CGFSTDLGIY GLIDESLISL  780
LGNKIEMPNI FQDAGRFVVC QEHEEPGNRS RLWDSSDIAG VLKNNTGTEA VEGIFLDASG  840
LTFDLSSTAF ARMYRLRLLK IHCPTSVNHC KVCLPEGLHS LPDELRLLHW EKYPLGSLPR  900
NFNPKNLVEL NMPYSNLTKV WKGTKNLEKL KRIILSHSQH LTKFPRLSKA RNLEHIDLEG  960
CTSLVKVNSS ILHHHKLTFL SLRNCSRLRV MPTTVHLKSL EVLNLSGCSE LENLQDFSLN  1020
LKELYLAGAA IRELPSSIGD LTRLVTLDLE NCESLQHLPP GISNLKAMMT LKLSGCSNLK  1080
SLPVLDALFL QDSQRSNTRI TMEESVSINL HSAIQESSRE ALEEFLPAFE CLSNNGIPQE  1140
SWTWVTVIPF PSPILHSLAS RLYALVSLFL CNAYLVDIPE DICWLASVMR LDLGGNSFSQ  1200
IPKSIKEFRN LHSLNLRHCK NLKSLPELPR SLVTLNAHGC VSLKSFPTSF EQFPRHFTFS  1260
NCFNLSPKVV RKYIGKALDS VKGMAKRILQ ASLEQEHINA PAFSICIPAS AGHQSSFNFQ  1320
AGSFVRRQLT PGMLKTLSGF ALSVVVEFWD NYSNNAGFGI KCICRKTRTD LSPRLERIFR  1380
CWAPKEPITV QRDHMFVFGS VKMHHAEAVN HDFLSDSVTF EFHPVNSENQ LLGDSCTVKR  1440
CGVYLITDAT GNTTLSAKRP SSSMDSGGLS SMEHVAPPYK RCRLKGVIEI VILSLRKRKR  1500
EMSVPTVKSF SKVKSLCRSY VRTGNCAVGP SCSFDHPTWV FTEKPKRLSA SKSNQATSGK  1560
DAIDTEQEEE YMPNVIPHVV QNVQLLAWIQ WSMWNDHIRD AD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1817429011127DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114361440TVKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107676001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672700.10.0disease resistance protein RRS1-like isoform X1
TrEMBLA0A0D3A4E00.0A0A0D3A4E0_BRAOL; Uncharacterized protein
STRINGBo1g021600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.11e-162Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]