PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108266001
Common NameGSBRNA2T00108266001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 309aa    MW: 34777 Da    PI: 5.8625
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108266001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573130.18.6e-41109204397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                          fqr+w+eeDei++LqG+id+k++tg+sp+dd +a+y+ vkks+sf+v+k+q++eKir LKkKf+++  + +k+gk+psfsk+hd+k+f+l
  GSBRNA2T00108266001 109 FQRVWTEEDEIAVLQGIIDYKNETGSSPYDDKNALYDLVKKSVSFDVTKTQFMEKIRALKKKFENNLGRcKKKGKDPSFSKAHDRKAFDL 198
                          9********************************************************************8899***************** PP

               DUF573  92 skkiWg 97 
                          +k +Wg
  GSBRNA2T00108266001 199 AKLVWG 204
                          *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.0E-35109204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSGKLLKKLE DPPIASSSSE EEDDEDAVAN SSSEEEEETD SETEAEPVAK PLAKPPADSR  60
KVETSSKPET KKKRSSEADE GEEAKRVKRV SGEDDHKKSK GEETKKSCFQ RVWTEEDEIA  120
VLQGIIDYKN ETGSSPYDDK NALYDLVKKS VSFDVTKTQF MEKIRALKKK FENNLGRCKK  180
KGKDPSFSKA HDRKAFDLAK LVWGDNGIMA LEPLSAVKSK KVEHAVKKQE EPAVKKQEFV  240
PIVDLVARFG VDDLAAKQGW SRLSSEDKER FEEQWKALQL KEFKFYSQKS GFIHEVVTKM  300
AEASRPDH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281160.0microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108266001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631648.10.0PREDICTED: mediator-associated protein 1-like
SwissprotC0SUU66e-74STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A0D3C0N80.0A0A0D3C0N8_BRAOL; Uncharacterized protein
STRINGBo4g143830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-68DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]