PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108336001
Common NameGSBRNA2T00108336001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22273.8 Da    PI: 4.5604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108336001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.6e-1626691356
                         HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++L + Fe ++++ ae++ +LA++lgL+ rqV vWFqNrRa++k
  GSBRNA2T00108336001 26 TALDKNFELENKLEAERKVKLAQELGLQPRQVAVWFQNRRARWK 69
                         5799***************************************9 PP
2HD-ZIP_I/II111.36.4e-36251071193
          HD-ZIP_I/II  11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                           ++L+++Fe e+kLe erKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e+++
  GSBRNA2T00108336001  25 QTALDKNFELENKLEAERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISK 107
                          468**************************************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.6E-112075IPR001356Homeobox domain
SuperFamilySSF466893.85E-152680IPR009057Homeodomain-like
PfamPF000467.1E-142669IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-172778IPR009057Homeodomain-like
CDDcd000866.65E-122772No hitNo description
PROSITE profilePS5007114.9812871IPR001356Homeobox domain
PRINTSPR000314.2E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000314.2E-65167IPR000047Helix-turn-helix motif
PfamPF021839.8E-1771112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MREFQSMLEG CEEEDKEAIT EERGQTALDK NFELENKLEA ERKVKLAQEL GLQPRQVAVW  60
FQNRRARWKT KQLEKDYGVL KTQYDSLRHN FDSLRRDNES LLQEISKLKC KLNGEEEEEE  120
ENNAVMMESE SVKEEEVLLP GGKRVTRHCA GASYRICDGG GGAEALFEFG EAVGFVSDVA  180
TREFLESFPR ASSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.23181e-102flower| leaf| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}.
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108336001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605691e-102AY060569.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankAY0638191e-102AY063819.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-6 (At2g22430) mRNA, complete cds.
GenBankAY0944571e-102AY094457.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankAY1229031e-102AY122903.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBankX670341e-102X67034.1 A.thaliana mRNA Athb-6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674222.18e-75homeobox-leucine zipper protein ATHB-6-like
SwissprotP466681e-57ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
SwissprotQ940J19e-58ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0D3AW109e-88A0A0D3AW10_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E6628e-89A0A3P6E662_BRAOL; Uncharacterized protein
STRINGBo2g139080.12e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-55homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]