PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108360001
Common NameGSBRNA2T00108360001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 400aa    MW: 45859.2 Da    PI: 6.2085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108360001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.7e-2579158286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li++rrem+  ++++k++k+lWee+s+kmre+gf rsp +C++kw+nl k++kk ++ ++      s ++++++++e
  GSBRNA2T00108360001  79 WVQDETRILIALRREMDGLFNTSKSNKHLWEEISSKMREKGFDRSPAMCTDKWRNLLKEFKKAAKDQQV-----SGKMSHYKEIE 158
                          **************************************************************9988775.....34566777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-569140IPR009057Homeodomain-like
PROSITE profilePS500908.74671135IPR017877Myb-like domain
SMARTSM007173.0E-675137IPR001005SANT/Myb domain
SuperFamilySSF466894.78E-575147IPR009057Homeodomain-like
CDDcd122031.46E-2877141No hitNo description
PfamPF138371.1E-1878159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFVSSEKPRS PIDFYKDDDD NNNPSSPTSR DINMMIDGDL QPPPHHQHQH QHQILLGDNS  60
SSEDHEINNK APKKRAETWV QDETRILIAL RREMDGLFNT SKSNKHLWEE ISSKMREKGF  120
DRSPAMCTDK WRNLLKEFKK AAKDQQVSGK MSHYKEIEDL LRERSKKVAT SYKSVTAPSK  180
VDSFMQFTDK GFEDTGISFA SVEANGRPTL NLERQLDHDG HPLAIASADV VTANGVPPWN  240
WREPAGNGKS SDGQPFVGKI ITVKYGDYTR RVGIDGTAEA IKEAIRSAFR FRTRRAFWLE  300
DEEQVVRSLD RDMPLGNYTL HVDEGIAVRV CHYDESDPLP VHQEEKVFYT EEDYREFLGR  360
RGWTCLREFD GGFRNIESMV RNVDSMDDLQ PGVLYRGMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4073156186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.196261e-133seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108360001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129574.10.0PREDICTED: trihelix transcription factor GT-4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLM4F5J80.0M4F5J8_BRARP; Uncharacterized protein
STRINGBra036354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]