PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108369001
Common NameGSBRNA2T00108369001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 316aa    MW: 35245.7 Da    PI: 5.6913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108369001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-13133180253
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          +  GVr++k +g+W+AeI +p     + +r +lg++ t e+Aa a+ a +++l
  GSBRNA2T00108369001 133 KPVGVRQRK-WGKWAAEIIHPI----TkTRTWLGTYETLEQAADAYAAKKLEL 180
                          678*****9.**********72....36*******************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.016133190IPR001471AP2/ERF domain
SMARTSM003803.4E-11133196IPR001471AP2/ERF domain
PfamPF008471.1E-9133181IPR001471AP2/ERF domain
PRINTSPR003672.4E-6134145IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-13135181IPR016177DNA-binding domain
CDDcd000183.54E-17135178No hitNo description
Gene3DG3DSA:3.30.730.102.6E-18136185IPR001471AP2/ERF domain
PRINTSPR003672.4E-6156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSEPKKRSSF QAKKPSKNHK RKTFQLNRLP GLLSEDLKTM RKLRFVVSDP YAEICQSKSH  60
IGSLDKECLI YKEMPNSNYE EDETCQTRKR YVCEIDRPFS QATAQSESES SSCHNGGSKA  120
KITHVVGRSS VRKPVGVRQR KWGKWAAEII HPITKTRTWL GTYETLEQAA DAYAAKKLEL  180
DALSAATSSV LSENALSDDS ASGSNVEAVS SIDLDKKLID FNLADLPIPD MGCFIDESLI  240
SNACKLDFHL PEESDQFLND MKFIGLERDG PSNLPDYDFS DVEFDLGLVG NIDNRFNFFD  300
HLATTTTTPL NIACL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108369001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895732e-62AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619627.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
SwissprotQ9LUA21e-102EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A0D3AVY10.0A0A0D3AVY1_BRAOL; Uncharacterized protein
STRINGBo2g138790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.24e-97ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]