PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00108890001

Common Name

GSBRNA2T00108890001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 283aa MW: 32150.8 Da PI: 7.6055

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00108890001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.5	1.3e-11	31	72	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ R+++il KA ELS+LCd ++vi + g+l ++++ GSBRNA2T00108890001 31 STSLLMRQETILRKAGELSTLCDNLICVIHYDRLGNLvKTWP 72 689999*************************99887537776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.88E-9	31	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-5	32	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDSSPSSSSS RNNKKVNKFS VRKQTLFKKP STSLLMRQET ILRKAGELST LCDNLICVIH 60 YDRLGNLVKT WPEDESQVQV IAERYSKLTH EEKQKKSTNL SKFCNKKMHD EKKRFPIKFS 120 QKVQELEGSL VGKLPLLQDI LLREDQSIMS EQNHNFPNYS SVPDHQQQSE SATSTEQDMS 180 RGDVYDSAAA TDQLLNHQSK YSIFLFNHEN ASFTQLPHSV SSSLQQTYYN NLSDNRALLG 240 GQGFNFGFGN NNVSTALPEE QVNFGYYNNS LNFGYDFNNL CT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00108890001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022564483.1	0.0	agamous-like MADS-box protein AGL93
TrEMBL	A0A3N6PNP2	0.0	A0A3N6PNP2_BRACR; Uncharacterized protein
STRING	Bra028019.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11759	7	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27580.1	7e-40	AGAMOUS-like 89

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]