PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108973001
Common NameGSBRNA2T00108973001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 330aa    MW: 38006.5 Da    PI: 7.5265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108973001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-17120165248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g+W + Ed  l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l
  GSBRNA2T00108973001 120 GAWDQSEDTNLRKLVELYGTKNWKRIANMLG-TRIGKQCRERWHNHL 165
                          89*****************************.*************97 PP
2Myb_DNA-binding51.22.9e-16171213145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +g+WT+eEd +lv+a+k +G++ W+ Ia ++  gRt++ +k+rw+
  GSBRNA2T00108973001 171 KGSWTKEEDRILVEAHKVFGNK-WANIALKLC-GRTENAIKNRWN 213
                          799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.35114169IPR017930Myb domain
SMARTSM007171.1E-14118167IPR001005SANT/Myb domain
SuperFamilySSF466892.03E-27118212IPR009057Homeodomain-like
PfamPF002498.1E-17119165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-22120171IPR009057Homeodomain-like
CDDcd001672.50E-14121165No hitNo description
PROSITE profilePS5129421.387170220IPR017930Myb domain
SMARTSM007172.3E-16170218IPR001005SANT/Myb domain
PfamPF002491.5E-14171213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-20172218IPR009057Homeodomain-like
CDDcd001673.29E-12173213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDYSFNIFNK NFTRKETGNS LTNDNLAYLQ ENHINCFNDN LGQSSVNGWS NSSIMTSNSD  60
SNHRSLMSVM PNQNYNHFGR SFVCTQNLPT FNSLITEIPP RYPFINIDLP ASMEGNFNTG  120
AWDQSEDTNL RKLVELYGTK NWKRIANMLG TRIGKQCRER WHNHLRHGIK KGSWTKEEDR  180
ILVEAHKVFG NKWANIALKL CGRTENAIKN RWNGTKRRIH QKRMKKSDKN ENPPQNVILV  240
RYIRQVTNEN ESPNTKETDC TKDDDHENAF DGEMDLSLDV TTQTTEPLAS MSTTSCYVPG  300
PVTTFSWDDY FTYICKSMDD IQMLMQGLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-351202188106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108973001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.20.0transcription factor MYB115-like
TrEMBLA0A3P6GUQ60.0A0A3P6GUQ6_BRAOL; Uncharacterized protein
STRINGBra025564.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.12e-52myb domain protein 100
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]