PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00109108001

Common Name

GSBRNA2T00109108001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 230aa MW: 25235.4 Da PI: 10.1923

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00109108001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.1	3.4e-55	85	178	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa++tlGfe+yveplk yl++y GSBRNA2T00109108001 85 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKFYLTRY 174 69**************************************************************************************** PP NF-YB 91 rele 94 re + GSBRNA2T00109108001 175 REGD 178 *965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.3E-53	81	202	IPR009072	Histone-fold
SuperFamily	SSF47113	4.35E-40	88	206	IPR009072	Histone-fold
Pfam	PF00808	1.1E-27	91	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.7E-21	119	137	No hit	No description
PROSITE pattern	PS00685	0	122	138	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.7E-21	138	156	No hit	No description
PRINTS	PR00615	7.7E-21	157	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSGGKIQKRE LLASRLLQRP INLLFLLRSP PHSLPPFSNH HHHPRARSRS QMADSQAKSS 60 GMSPGVGGGG SHESGGDQSP RSMNVREQDR FLPIANISRI MKRGLPANGK IAKDAKETMQ 120 ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKFY LTRYREGDNK 180 GSGKGGESSA KRDGQPGQFL QQGQQGSFSQ GPYGNSQGSH MMVQMPNAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-48	85	176	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-48	85	176	1	92	Transcription factor HapC (Eurofung)
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6211	0.0	microspore-derived embryo\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00109108001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787672	1e-135	KC787672.1 Brassica napus transcription factor subunit NF-YB10 (NF-YB1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018493235.1	1e-105	PREDICTED: nuclear transcription factor Y subunit B-10
Swissprot	Q67XJ2	8e-94	NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBL	M4CRZ9	1e-128	M4CRZ9_BRARP; Uncharacterized protein
STRING	Bra006991.1-P	1e-128	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-71	nuclear factor Y, subunit B10

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]