PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109121001
Common NameGSBRNA2T00109121001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 246aa    MW: 29301.6 Da    PI: 7.5028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109121001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181158148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
  GSBRNA2T00109121001 11 RGPWLEEEDERLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58
                         89********************************************97 PP
2Myb_DNA-binding54.13.5e-1764108147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++++eE+ ++ +++ q+G++ W++Iar+++ gRt++++k++++++
  GSBRNA2T00109121001  64 RGPMSQEEETIIFQLHSQWGNK-WSKIARRLP-GRTDNEVKNYYRTH 108
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.346662IPR017930Myb domain
SuperFamilySSF466891.68E-279105IPR009057Homeodomain-like
SMARTSM007171.1E-131060IPR001005SANT/Myb domain
PfamPF002491.6E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-201265IPR009057Homeodomain-like
CDDcd001671.56E-81358No hitNo description
SMARTSM007172.2E-1663111IPR001005SANT/Myb domain
PROSITE profilePS5129420.27363113IPR017930Myb domain
PfamPF002498.5E-1564108IPR001005SANT/Myb domain
CDDcd001672.01E-966109No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2466113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDYKKEETLR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSQE EETIIFQLHS QWGNKWSKIA RRLPGRTDNE VKNYYRTHFR KKLEAQNYDK  120
IIDWRKNPGE ELFHKYKETE IAWTRTTTQE HGFDKPVKES KQKNMESDKE TNGGICERES  180
FGVMNSPYEN RISDWISEIS TDRSDANFLE DRTSSSSENN ININVGSWWF QETRDFEEFS  240
CSLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2891132105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109121001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-152AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
GenBankAC1895021e-152AC189502.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603906.10.0PREDICTED: transcription factor MYB59
RefseqXP_022563629.10.0transcription factor MYB27-like
SwissprotQ9SCP11e-138MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A0D3DSP91e-180A0A0D3DSP9_BRAOL; Uncharacterized protein
STRINGBo8g082570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-135myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]