PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00109433001

Common Name

GSBRNA2T00109433001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 384aa MW: 40680.7 Da PI: 4.2865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00109433001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H GSBRNA2T00109433001 168 FTCPTCKKGFPSSQALGGHQNAH 190 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.59E-6	165	196	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-4	166	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	168	195	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.7E-7	168	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	170	190	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSSSSSSVVQ VVSSASSPAP QPEKCNDVTV AVEESIEKAT ENQAVSSAGS SAAPQPEKSN 60 DVTVAVEEAK EMAAENQVVS SAGSSAAPPQ PNDIIVAVEG DKEMATENQI VPYTGSPAPQ 120 PEQCTDIVIV ATENNDPGSE NPSLIGSGAV PPGSQILQLY PPRSNKIFTC PTCKKGFPSS 180 QALGGHQNAH KQEREWERKR KNMEQEYPGF AFLNPNIDNP LMFFLGGYSE DALTHENHLG 240 IPLDDAFKRR FARNHPSVNN GFSDMNITAV PRVAPTGFFA GNTSTTNGSS SGGLGPRPPY 300 NSYPPMLPRN FPPFPPPQTN NLPRGLYPQQ ENVLNEVNFI SEIGKGKNIM EIDDNDDDAD 360 AGAGADDGPI EGTSKSWGAD LSL*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSSSSSSVVQ VVSSASSPAP QPEKCNDVTV AVEESIEKAT ENQAVSSAGS SAAPQPEKSN  60
DVTVAVEEAK EMAAENQVVS SAGSSAAPPQ PNDIIVAVEG DKEMATENQI VPYTGSPAPQ  120
PEQCTDIVIV ATENNDPGSE NPSLIGSGAV PPGSQILQLY PPRSNKIFTC PTCKKGFPSS  180
QALGGHQNAH KQEREWERKR KNMEQEYPGF AFLNPNIDNP LMFFLGGYSE DALTHENHLG  240
IPLDDAFKRR FARNHPSVNN GFSDMNITAV PRVAPTGFFA GNTSTTNGSS SGGLGPRPPY  300
NSYPPMLPRN FPPFPPPQTN NLPRGLYPQQ ENVLNEVNFI SEIGKGKNIM EIDDNDDDAD  360
AGAGADDGPI EGTSKSWGAD LSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00109433001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607504.1	0.0	PREDICTED: uncharacterized protein LOC106314117
Refseq	XP_022571266.1	0.0	uncharacterized protein LOC111213724
TrEMBL	A0A0D3E149	0.0	A0A0D3E149_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DNX5	0.0	A0A3P6DNX5_BRAOL; Uncharacterized protein
STRING	Bo9g010540.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	6e-57	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]