PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109560001
Common NameGSBRNA2T00109560001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 423aa    MW: 47562.1 Da    PI: 4.8993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109560001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07354409147
                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                          r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
  GSBRNA2T00109560001 354 RLLWTPEEEYMLKVGVEKFAAKakkniPWRKILEMGQkvfhETRTPSDLKDKWRNM 409
                          677******************************9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.7E-463126IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154890.0047978126No hitNo description
PROSITE profilePS500907.282349410IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.9E-9350417IPR009057Homeodomain-like
SuperFamilySSF466891.64E-9352410IPR009057Homeodomain-like
SMARTSM007174.1E-4353412IPR001005SANT/Myb domain
PfamPF002496.0E-6356409IPR001005SANT/Myb domain
CDDcd116602.77E-10357410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTRSKSLPIR SSRKSLDPYH PSPASLPEEA NQGVSNKRYP PQIEIGDDDV EIVTDAFDGR  60
DKKRHCVGTS EPLNLEACIV CETSDELVYR CCGADCLLWF HEECLNAEFG SGGGGEDPAN  120
PFCPYCWFQI LAVKSIRLKE KAVGAEMAVF KYILDEEMRS RGEVDESVPK GQEGSMDATD  180
IVSDQEVEGE KVAYSSKETN QSEGEKESFE VRTDKVEERV VTENFQDAED DETAGDKTTG  240
NTCAGKERDV SPFLSMQESF SGKEHDQVQQ SEKRRRKRRL ILNAFDSDVS SNGSTNEPNG  300
EDAVKNITSL ALVVNSPLGM TKNQQREDSR TTKVDNSKTV RLDIPIFKMD QKRRLLWTPE  360
EEYMLKVGVE KFAAKAKKNI PWRKILEMGQ KVFHETRTPS DLKDKWRNMT GARLKNKQDS  420
TT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271279EKRRRKRRL
2272278KRRRKRR
3272279KRRRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109560001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893051e-166AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609213.10.0PREDICTED: uncharacterized protein LOC106315917 isoform X1
TrEMBLA0A0D3E0T00.0A0A0D3E0T0_BRAOL; Uncharacterized protein
STRINGBo9g009350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]