PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109570001
Common NameGSBRNA2T00109570001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 97aa    MW: 11148.9 Da    PI: 8.488
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109570001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.71.1e-31193267360
                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                          +f+s++++lpr++++ri+vE+++l+r++vn++acega+r+erhe l+kWr+r+ +aGF+p+pls  +++++k+llr+++++ yr+ee++g
  GSBRNA2T00109570001   1 MFESIDVTLPRNHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFCMAGFTPYPLSPLVNSTIKTLLRNYSDK-YRLEERDG 89 
                          7******************************************************************************55.******** PP

                 GRAS 357 slvl 360
                          +l++
  GSBRNA2T00109570001  90 ALYI 93 
                          9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.6E-29193IPR005202Transcription factor GRAS
PROSITE profilePS5098519.245188IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MFESIDVTLP RNHKQRINVE QHCLARDVVN IIACEGADRV ERHELLGKWR SRFCMAGFTP  60
YPLSPLVNST IKTLLRNYSD KYRLEERDGA LYILVG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109570001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893051e-118AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725214.15e-62scarecrow-like transcription factor PAT1
RefseqXP_018440830.11e-58PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018440831.11e-58PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018440832.11e-58PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL72e-59PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A3P6E1765e-66A0A3P6E176_BRAOL; Uncharacterized protein
STRINGBo9g009240.11e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3172722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-61GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]