PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109996001
Common NameGSBRNA2T00109996001, LOC106348605, LOC106348607
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 551aa    MW: 61271.3 Da    PI: 4.9085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109996001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.24.9e-1331805503374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L++cA+a+s+g+ e+a ++L++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++e++P++k
  GSBRNA2T00109996001 180 QILISCARALSEGKSEEALSMLNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGTFLYRALKCKEPP---SDERLAAMQVLFEACPCFK 266
                          78*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f+ l+aN aI+e++  e++vHiiDfdi+qG Q+++L++++a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  gv+f+f++
  GSBRNA2T00109996001 267 FGLLAANGAIVESIRDEKEVHIIDFDINQGNQYMTLIRTIAELPGKGPRLRLTGIDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFKFKA 356
                          ***********************************************************9989999************************ PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                          +++k+   +++++L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vk+l+Pk+v+vveq++++n+++F+ rf+ea eyysa+f+s
  GSBRNA2T00109996001 357 VASKTSLIVSPSTLGCKPGEALIVNFAFQLHHMPDESVTIVNQRDELLHMVKGLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFES 446
                          988899999********************************************************************************* PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+++lpres+er++vEr++l+r+ivnvvaceg+er+er e ++kWr+r+++aGF++ p+s++++ ++++l+++ +   y+v+ee g+l++
  GSBRNA2T00109996001 447 LDVTLPRESQERMNVERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFSSRPMSSRVTRSIQSLIKEEYCSKYKVKEEMGELLF 536
                          ***************************************************************************666************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          +W+d++L+++SaWr
  GSBRNA2T00109996001 537 CWEDKSLIVASAWR 550
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.866152530IPR005202Transcription factor GRAS
PfamPF035141.7E-130180550IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVEQTARVMS LVRSAEPSAA AYRNPKLYSP NENGYNSGGG ASVEIFDPDR SKNTCLTHDN  60
SYPSQSYFLD SPTEQHPVAC GAASVSSFGS LDSSPYQSRP VLGSSMEFDD EQMRSKIQEL  120
ERALLSDEDD DIMEGLDHLM EIDNEWSYQN HSSKDSSSAD SNSQASSTKE VVSQAKTPKQ  180
ILISCARALS EGKSEEALSM LNELRQIVSI QGDPSQRIAA YMVEGLAARM AASGTFLYRA  240
LKCKEPPSDE RLAAMQVLFE ACPCFKFGLL AANGAIVESI RDEKEVHIID FDINQGNQYM  300
TLIRTIAELP GKGPRLRLTG IDDPESVQRS VGGLRIIGLR LEQLAKDHGV SFKFKAVASK  360
TSLIVSPSTL GCKPGEALIV NFAFQLHHMP DESVTIVNQR DELLHMVKGL NPKLVTVVEQ  420
DVNTNTSPFF PRFMEAYEYY SAVFESLDVT LPRESQERMN VERQCLARDI VNVVACEGEE  480
RIERYEVAGK WRARMMMAGF SSRPMSSRVT RSIQSLIKEE YCSKYKVKEE MGELLFCWED  540
KSLIVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-561805506375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180740.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109996001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643825.10.0scarecrow-like protein 1
RefseqXP_013643827.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D3D7H20.0A0A0D3D7H2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EUB40.0A0A3P6EUB4_BRAOL; Uncharacterized protein
STRINGBo7g059410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]