PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110040001
Common NameGSBRNA2T00110040001, LOC106425654
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 224aa    MW: 24915.9 Da    PI: 6.8718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110040001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-163888155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r +lg++ ta+ Aa+a++ a ++l+g
  GSBRNA2T00110040001 38 KKYKGVRMRS-WGSWVSEIRAP---NQKTRLWLGSYSTAKVAARAYDVALLCLKG 88
                         59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576130No hitNo description
PROSITE profilePS5103221.2723996IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-193998IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-293998IPR001471AP2/ERF domain
PfamPF008471.1E-93988IPR001471AP2/ERF domain
SMARTSM003801.0E-3239102IPR001471AP2/ERF domain
PRINTSPR003674.4E-84051IPR001471AP2/ERF domain
CDDcd000183.63E-264298No hitNo description
PRINTSPR003674.4E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVKQEPKIQT SSKKDMSLTS PSHSSSSSSC KSKKNKIKKY KGVRMRSWGS WVSEIRAPNQ  60
KTRLWLGSYS TAKVAARAYD VALLCLKGPQ ANLNFPTSYS SSHFLLDEST ILSPKSIKRI  120
AAQAANNSFD LFSPCISSAV SSPPDHDQQH DDDGMQSLIG PLVDCHVSLM DTSSSWYDGE  180
HHEMLFFGDG APFDYYPELN STMNMVNDQY FYEDADIPLW SFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13391001476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142192e-93seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110040001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597070.11e-166PREDICTED: ethylene-responsive transcription factor ERF012-like
RefseqXP_013721824.11e-166ethylene-responsive transcription factor ERF012
SwissprotQ9SFE41e-89ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0D3D7N01e-164A0A0D3D7N0_BRAOL; Uncharacterized protein
STRINGBo7g059990.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-85ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]