PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110214001
Common NameGSBRNA2T00110214001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 190aa    MW: 22078.5 Da    PI: 9.1462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110214001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-132575254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++h e+Er+RR+++ s ++ Lr+llP  +   ++K s ++ + +A +YI +L
  GSBRNA2T00110214001 25 KMMHREIERQRRQEMASLYASLRSLLPLHF--IQGKRSTSDQVNEAANYITYL 75
                         789*************************65..*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.5482375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-102590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-102575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-142591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-82580No hitNo description
SMARTSM003533.2E-52981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYASLRSLL PLHFIQGKRS  60
TSDQVNEAAN YITYLHKKIK ELSSKRDELM LLSRGSFSDD SKDEMKMMNH VVVRHCLAGL  120
EIVFSSRYYG GQPRLSSVLQ VLSENGLCLL NAIYSIVDDR SAYGLFSLQV NDMTLIDFRK  180
LEESLIRMK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110214001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575952.11e-129transcription factor bHLH36-like
SwissprotQ9FLI12e-76BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A3P6CRY51e-133A0A3P6CRY5_BRACM; Uncharacterized protein
STRINGBo9g103560.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.16e-79bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]