PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110700001
Common NameGSBRNA2T00110700001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 219aa    MW: 24918.8 Da    PI: 6.5094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110700001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.5e-15350148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W+ eE e+l   + ++G ++W++ ++  g+ R++k+c++rw++yl
  GSBRNA2T00110700001  3 RGPWSDEESERLNAFILKHGHHNWRSLPKLAGLARCGKSCRLRWLNYL 50
                         89********************************************97 PP
2Myb_DNA-binding54.52.7e-1756101148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  GSBRNA2T00110700001  56 RGNFTKEEEDTIIHLHQVLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 101
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.545150IPR017930Myb domain
SMARTSM007174.2E-9252IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-29297IPR009057Homeodomain-like
PfamPF002494.4E-13350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-21457IPR009057Homeodomain-like
CDDcd001673.86E-7550No hitNo description
PROSITE profilePS5129425.22151105IPR017930Myb domain
SMARTSM007173.0E-1555103IPR001005SANT/Myb domain
PfamPF002494.5E-1656101IPR001005SANT/Myb domain
CDDcd001671.07E-1058101No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2758104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
LKRGPWSDEE SERLNAFILK HGHHNWRSLP KLAGLARCGK SCRLRWLNYL RPGLKRGNFT  60
KEEEDTIIHL HQVLGNKWSK IASHLPGRTD NEIKNVWNTH LKKRSVKSNS ASDVTNQASS  120
VSSSSSSVST DVINSEKHNQ EEELENILVE HIACGFEVNA PQSLEYLFED RQIPPLSISK  180
PDSLEIHMQS DDDLCSRMVE PGLDVYNEWL SYFDNQTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2511045107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110700001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195861e-101AY519586.1 Arabidopsis thaliana MYB transcription factor (At3g12820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627950.11e-161PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTV41e-105MYB10_ARATH; Transcription factor MYB10
TrEMBLA0A0D3BB031e-159A0A0D3BB03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBU41e-159A0A3P6BBU4_BRAOL; Uncharacterized protein
STRINGBo3g065150.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.11e-106myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]