PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110850001
Common NameGSBRNA2T00110850001, LOC106406911
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 406aa    MW: 45394.2 Da    PI: 6.021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110850001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.81.2e-135454054374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          +L++cA+a+s+++l laq+++ +l+ ++s +g+p+qRl ay++e+L arla ++s++yk+l+++e +   s + l+++ l++ev+P++kf
  GSBRNA2T00110850001  45 VLVACAKAISENNLLLAQWCIGELRRMVSISGEPIQRLGAYMLEGLVARLAATGSSIYKSLQSREPE---SYDFLSYVYLLHEVCPYFKF 131
                          79***************************************************************99...9******************* PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                          +++ aN aI ea++ eer+HiiDf+i++G QW+aL+qa+a+Rp+g+p++RiTg+g+       +l ++++rL+k+A++++vpf+f++ v+
  GSBRNA2T00110850001 132 GYMSANGAIAEAMKDEERIHIIDFQIGEGSQWVALIQAFAARPGGAPNIRITGIGD-----GSKLVAVRRRLEKLAKKFDVPFKFHA-VS 215
                          ********************************************************.....889***********************.78 PP

                 GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                           +  ++e+e+L+v+ gEal Vn++++lh+l+desvs+e++rd+vL++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++
  GSBRNA2T00110850001 216 ASSCKVEVENLDVRIGEALGVNFAYMLHHLPDESVSTENHRDRVLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDV 305
                          89999************************************************************************************* PP

                 GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                           lpr+++eri+vE+++l+ ++vn++acegaer+erhe l+kW++r+++aGF p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW+
  GSBRNA2T00110850001 306 ILPRNHKERINVEQHCLASDVVNIIACEGAERIERHELLGKWKSRFSMAGFVPYPLSSVVSATIRALLKDYN-NGYGIEERDGALCLGWM 394
                          ************************************************************************.9**************** PP

                 GRAS 364 drpLvsvSaWr 374
                          dr Lvs +aW+
  GSBRNA2T00110850001 395 DRILVSSCAWK 405
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.40116386IPR005202Transcription factor GRAS
PfamPF035144.0E-13345405IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLQPLPEIAE SINDSVNYEH SIWPGDTDDL MLIVDAISRG DLKWVLVACA KAISENNLLL  60
AQWCIGELRR MVSISGEPIQ RLGAYMLEGL VARLAATGSS IYKSLQSREP ESYDFLSYVY  120
LLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGEG SQWVALIQAF AARPGGAPNI  180
RITGIGDGSK LVAVRRRLEK LAKKFDVPFK FHAVSASSCK VEVENLDVRI GEALGVNFAY  240
MLHHLPDESV STENHRDRVL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF  300
ESIDVILPRN HKERINVEQH CLASDVVNII ACEGAERIER HELLGKWKSR FSMAGFVPYP  360
LSSVVSATIR ALLKDYNNGY GIEERDGALC LGWMDRILVS SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-60464058375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110850001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703111.10.0scarecrow-like protein 21 isoform X2
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A3N6S2520.0A0A3N6S252_BRACR; Uncharacterized protein
STRINGBo7g030310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]