PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110970001
Common NameGSBRNA2T00110970001, LOC106373951, LOC106454260
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 187aa    MW: 21555.8 Da    PI: 4.8994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110970001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-1391135347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+ E+  ++++  ++G g+Wk+++r+  k+R++kq+ s+ qky
  GSBRNA2T00110970001  91 PWTAKEHGDFLKGLDEFGRGDWKSVSREYVKTRSAKQVASHAQKY 135
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071747552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-982139IPR009057Homeodomain-like
PROSITE profilePS512941684140IPR017930Myb domain
SuperFamilySSF466897.41E-1486139IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-1487139IPR006447Myb domain, plants
SMARTSM007174.4E-788138IPR001005SANT/Myb domain
PfamPF002494.2E-1091135IPR001005SANT/Myb domain
CDDcd001674.67E-691136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAWWEQWGRD EDKMFEEALV LTENVPNRFE AIASYLEMPL EVVKHYYDAL VRDVELIESD  60
RYGTIDHQDH ADGILSPETK HMEKDNKRGR PWTAKEHGDF LKGLDEFGRG DWKSVSREYV  120
KTRSAKQVAS HAQKYFQRQD MENHAKKRSS INDMTLADVN DADDVPAPRS DSEATMDPAH  180
FGQQTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110970001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669516.21e-138transcription factor MYBS1-like isoform X1
RefseqXP_013751861.21e-138transcription factor MYBS1-like
RefseqXP_022567757.11e-138transcription factor MYBS1-like isoform X2
TrEMBLA0A0D3CLD91e-135A0A0D3CLD9_BRAOL; Uncharacterized protein
STRINGBo5g137250.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.11e-44MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]