PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111011001
Common NameGSBRNA2T00111011001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 341aa    MW: 38834.3 Da    PI: 10.1239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111011001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-1226743487
                         SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3 34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                         + l+l++  s ++Wevk+  ++++    lt+GW++F++ +g+++gD+v+F++dg+
  GSBRNA2T00111011001 26 FLLKLTSdASDKTWEVKM--DGRR----LTRGWQNFANGHGVRVGDIVIFRRDGD 74
                         55666665889*******..9998....***********************6653 PP
2B354.62e-17122216398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           + +++++l++++l +p++f +++g+  +e  +++l +e g+ W++ l+  + ++g++++++GW++F+++n+ +++  ++Fkl++  +++
  GSBRNA2T00111011001 122 VARVTASNLSRDMLFFPRDFSRSNGLMDRE-CEIILLNEYGKPWKLFLRNhKTHGGGVYIRTGWRRFCRQNRKRVNSLLTFKLVQ-AGTK 209
                          5668999*****************777544.59***************663555555**************************98.7888 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +v+++++
  GSBRNA2T00111011001 210 PVLQLCS 216
                          9999997 PP
3B3536.3e-17240327190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++ ++l+++ l+lp kf+  +g+++++  ++tl d+ g + +  l+ ++k g++ ++kGW+eF+kang+k+g++++++l++++e 
  GSBRNA2T00111011001 240 FLTLTLTTYSLRKSKLCLPGKFVWLNGIENAR--KITLVDRYGVKRTTSLRPDNKYGAMRMGKGWREFCKANGVKAGESFTLELIKEEEI 327
                          66777899999************999988555..8********999999999********************************987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.321185IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-16887IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-81485IPR003340B3 DNA binding domain
CDDcd100171.66E-101882No hitNo description
Gene3DG3DSA:2.40.330.106.9E-162994IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-73274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18114217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19115217IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-23120218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14120217IPR003340B3 DNA binding domain
CDDcd100171.55E-17120216No hitNo description
PfamPF023621.7E-16122216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-18232332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18236333IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-19240339IPR003340B3 DNA binding domain
PfamPF023625.9E-15240328IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111240339IPR003340B3 DNA binding domain
CDDcd100176.28E-14250325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTNASASSPI NPHFFKPLLP KHSHDFLLKL TSDASDKTWE VKMDGRRLTR GWQNFANGHG  60
VRVGDIVIFR RDGDLLFHVT SFGPSCCQIL YDDDVIQVSS DSEKYHQDTR EEGSPSDNAC  120
FVARVTASNL SRDMLFFPRD FSRSNGLMDR ECEIILLNEY GKPWKLFLRN HKTHGGGVYI  180
RTGWRRFCRQ NRKRVNSLLT FKLVQAGTKP VLQLCSSMYN RDSLRGSSSS SSSSRSQERF  240
LTLTLTTYSL RKSKLCLPGK FVWLNGIENA RKITLVDRYG VKRTTSLRPD NKYGAMRMGK  300
GWREFCKANG VKAGESFTLE LIKEEEINTS THLLKFCTEV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111011001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583413.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A0D3CLA20.0A0A0D3CLA2_BRAOL; Uncharacterized protein
STRINGBo5g136880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.18e-76B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]