PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111155001
Common NameGSBRNA2T00111155001, LOC106452525
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 241aa    MW: 25113.2 Da    PI: 10.1006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111155001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-073558225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++G++C+F H
  GSBRNA2T00111155001 35 KSKPCTKFFSTSGCPFGENCHFLH 58
                         7789******************** PP
2zf-CCCH33.76e-11209234127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+ C +f++ G C +GdrC+FaHg+
  GSBRNA2T00111155001 209 FKTKMCERFSK-GSCTFGDRCHFAHGE 234
                          69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8873361IPR000571Zinc finger, CCCH-type
SMARTSM003560.333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-63458IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-83558IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-15100181IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-15110179IPR004088K Homology domain, type 1
SMARTSM003229.2E-10110180IPR004087K Homology domain
PROSITE profilePS5008414.068111175IPR004088K Homology domain, type 1
CDDcd001051.78E-13113175No hitNo description
PfamPF000138.8E-12113177IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.9E-16203238IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6208234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446208235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8208238IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7209234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDARKRGRPE AGSFNSNGGG FKKSKQEMES GLGSKSKPCT KFFSTSGCPF GENCHFLHFV  60
PGGYNPMAQM TNMGSPMSQV SRNMQGGGGG GGRFSGRGES GPGHVSSFGA SATAKISVDA  120
SLAGAIIGKG GVCSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGTFEQINE ASAMVRELIG  180
RLNSASRRPP GGGGGGLGSE GKPHPGSNFK TKMCERFSKG SCTFGDRCHF AHGEAELRRS  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.167550.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111155001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750125.11e-173zinc finger CCCH domain-containing protein 36 isoform X1
RefseqXP_022559370.11e-173zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-141C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A3P6FWH21e-171A0A3P6FWH2_BRAOL; Uncharacterized protein
STRINGBra034776.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-123C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]