PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111307001
Common NameGSBRNA2T00111307001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 295aa    MW: 32996.5 Da    PI: 4.0633
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111307001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF244.9e-08341240
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         ri     + +tf+kR  g+  K + L+ L+da++av+  
  GSBRNA2T00111307001  3 RITKRESAATTFTKRSYGLHSKVSQLCLLTDAQIAVLAT 41
                         788888999***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0064153IPR002100Transcription factor, MADS-box
CDDcd002661.69E-15173No hitNo description
PROSITE profilePS5006610.624139IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-9167IPR002100Transcription factor, MADS-box
PfamPF003192.5E-8344IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MERITKRESA ATTFTKRSYG LHSKVSQLCL LTDAQIAVLA TPPSSHSNVS FFSFGHSSVD  60
SIVTAFLTGE RPAVREEIED HEDLGICLAR KELGLPQWWD DDALLKSKNP QELSLAINSM  120
SRLLTKINEL RAEDAEEEPP LKKQKKKKNE ETMKKTEPTV EQTLVLPSGS SDRTLDYNNN  180
NNDSLEEIDF DQLIDLDLDL DFDFESMNSS DNNDETMKMT EPLDQPLLLP YDICASPDNN  240
NTYSTGEMSL DYGIDKQLQE TTIAMSSVAC DDGVSALNED DINFSDYLTQ FLQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111307001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013742826.20.0agamous-like MADS-box protein AGL97
RefseqXP_022559721.10.0agamous-like MADS-box protein AGL97
TrEMBLA0A3P6BYQ00.0A0A3P6BYQ0_BRACM; Uncharacterized protein
STRINGBra033492.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2028033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.16e-55M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]