PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00111491001

Common Name

GSBRNA2T00111491001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 347aa MW: 39030.1 Da PI: 8.0313

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00111491001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.3e-32	174	227	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GSBRNA2T00111491001 174 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 227 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-15	171	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	172	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	174	227	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	175	226	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSQ PSSTSKTTNN HHHHPLEDRS LSNNSHRHQQ QHPHLLPNCN 60 GSNIFTSFQF PTQQQQHLQG FLAHDLNTHL RPIRGIPLYQ NPPPHHHHRP PPCFPFDPSS 120 LIPSSSPTPT GINNNSFGTS RVNPNHHNHQ HHHQTLNRAR FMPRFPAKRS MRAPRMRWTT 180 TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSEQ 240 SDVYENGSSG DNNSDDWMFD MNRKSRDSDE LTNPLEKSNG RWTNSSGEAR LHGKLIDNVA 300 EIILPSENEI DGKSSSYERI SSEEMSSSNS SGTSPFKPNL EFTLGS*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSQ PSSTSKTTNN HHHHPLEDRS LSNNSHRHQQ QHPHLLPNCN  60
GSNIFTSFQF PTQQQQHLQG FLAHDLNTHL RPIRGIPLYQ NPPPHHHHRP PPCFPFDPSS  120
LIPSSSPTPT GINNNSFGTS RVNPNHHNHQ HHHQTLNRAR FMPRFPAKRS MRAPRMRWTT  180
TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSEQ  240
SDVYENGSSG DNNSDDWMFD MNRKSRDSDE LTNPLEKSNG RWTNSSGEAR LHGKLIDNVA  300
EIILPSENEI DGKSSSYERI SSEEMSSSNS SGTSPFKPNL EFTLGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	175	229	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00111491001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493491	0.0	AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBank	AY048689	0.0	AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBank	BT029211	0.0	BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587706.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	1e-163	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3P6EWL9	0.0	A0A3P6EWL9_BRAOL; Uncharacterized protein
STRING	Bo5g048880.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-130	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]