PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111614001
Common NameGSBRNA2T00111614001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 198aa    MW: 22501.7 Da    PI: 8.4249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111614001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.2e-2262155499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++l+++++ lp +f +++g+ + ++ +++l +e+g++W++ +++ k sgr+ +++GWk+F+ +n+ +++Df++Fkl++ +++++v
  GSBRNA2T00111614001  62 ACVTASNLSTDMVHLPMDFSRSNGLTN-RNCEIILLNEEGKQWTLLMRHHKASGRVCIRSGWKRFCYENRRRANDFLTFKLVR-NGATPV 149
                          55789999***************9885.567**************************************************98.88889* PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++++
  GSBRNA2T00111614001 150 LQLCSS 155
                          **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.969143IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-11550IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-8540No hitNo description
Gene3DG3DSA:2.40.330.101.8E-14651IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2353155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-2254157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.26959156IPR003340B3 DNA binding domain
CDDcd100172.77E-2159153No hitNo description
SMARTSM010195.3E-2660156IPR003340B3 DNA binding domain
PfamPF023624.1E-2161155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDDRRLTQGW QKFAASHDLR VGDIVIFRHD GDLLLHVSFF GPSCCEIRYN HDDDDDNSCF  60
VACVTASNLS TDMVHLPMDF SRSNGLTNRN CEIILLNEEG KQWTLLMRHH KASGRVCIRS  120
GWKRFCYENR RRANDFLTFK LVRNGATPVL QLCSSSSSST TRPCRFVTLT LTPYTLKSSA  180
LSAMCLLTYQ ERGGFKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111614001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894311e-151AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135145.11e-112PREDICTED: B3 domain-containing protein REM8-like isoform X2
SwissprotQ8H2D12e-47REM8_ARATH; B3 domain-containing protein REM8
TrEMBLM4CB081e-110M4CB08_BRARP; Uncharacterized protein
STRINGBra001387.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-48B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]