PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111648001
Common NameGSBRNA2T00111648001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 448aa    MW: 50523.7 Da    PI: 5.5473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111648001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-51271541128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv g+++++ ++i ++diyk+ePwdL   +++k++++ewyf++  dkky +g r nr+t+ gyWkatgk
  GSBRNA2T00111648001  27 LAPGFRFHPTDEELVSYYLKRKVLGRPVRF-DAIGDADIYKYEPWDLAvfSRLKTRDQEWYFYCALDKKYGNGARMNRSTNIGYWKATGK 115
                          579************************999.99**************8544899999********************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+e+ + +++  g+kktLvf++grap+g +t+Wvmheyrl
  GSBRNA2T00111648001 116 DREIRR-GDQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5820178IPR003441NAC domain
PROSITE profilePS5100555.58827178IPR003441NAC domain
PfamPF023651.7E-2629154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDRGSVAVES LPSSATAPST AVAATALAPG FRFHPTDEEL VSYYLKRKVL GRPVRFDAIG  60
DADIYKYEPW DLAVFSRLKT RDQEWYFYCA LDKKYGNGAR MNRSTNIGYW KATGKDREIR  120
RGDQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLVKVFHKKN  180
IGPPSANRYA PFIEEEWADD GVVRVRAEPL PVANGNNQMG QLKGSLSKYC FQLMTEFVES  240
GLHEPSESKE LININETPRE FTPMDMEVNH QENALKPQEN NNNNNNHCDE DEKALKREHA  300
DEVECPPPPP LPLLQYKRRR QNESNNKNSS RTTPDSSTTT TLISSSAAAA ATSTAISALL  360
EFSLMDISEK KPLHKEGSPP TPLPSLEENM LNDLYKEIHE MSVERETFKL EMMSAEAMIS  420
ILQSRIDALR QENDELKKNS DKGQGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-422618019170NAC domain-containing protein 19
3swm_B2e-422618019170NAC domain-containing protein 19
3swm_C2e-422618019170NAC domain-containing protein 19
3swm_D2e-422618019170NAC domain-containing protein 19
3swp_A2e-422618019170NAC domain-containing protein 19
3swp_B2e-422618019170NAC domain-containing protein 19
3swp_C2e-422618019170NAC domain-containing protein 19
3swp_D2e-422618019170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79490.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111648001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667531e-178KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648149.10.0NAC domain-containing protein 53-like isoform X1
RefseqXP_013648150.10.0NAC domain-containing protein 53-like isoform X1
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A398A8790.0A0A398A879_BRACM; Uncharacterized protein
STRINGBra001366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-176NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]