PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111710001
Common NameGSBRNA2T00111710001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 1726aa    MW: 194419 Da    PI: 5.0509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111710001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-1613131359148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                           +g WT+eEde+l ++v ++  ++Wk++a+ ++ gRt+ qc +rwqk+l
  GSBRNA2T00111710001 1313 KGGWTKEEDEILRQGVCRFKAKSWKKVAEVLP-GRTEVQCMHRWQKVL 1359
                           688*****************************.************986 PP
2Myb_DNA-binding55.11.8e-1713651411148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                           +g WT++Ede ++++v+++G + W++I++ ++ gR +kqc++rw+++l
  GSBRNA2T00111710001 1365 KGHWTQQEDETIIELVEKYGAKKWSLISQSLP-GRIGKQCRERWHNHL 1411
                           789*****************************.*************97 PP
3Myb_DNA-binding54.33.1e-1714171460146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                           + +WT+eE++ l++a+  +G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00111710001 1417 KEAWTPEEELALLNAHVIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 1460
                           579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.472.101.0E-1764163IPR013763Cyclin-like
SMARTSM003850.2576160IPR013763Cyclin-like
SuperFamilySSF479541.89E-1780164IPR013763Cyclin-like
PfamPF003824.2E-889151IPR013150Transcription factor TFIIB, cyclin-like domain
CDDcd000435.72E-591159No hitNo description
SuperFamilySSF479545.29E-23173265IPR013763Cyclin-like
CDDcd000432.33E-7175280No hitNo description
Gene3DG3DSA:1.10.472.103.1E-23175264IPR013763Cyclin-like
SMARTSM003852.0E-4178262IPR013763Cyclin-like
PfamPF003823.8E-10193253IPR013150Transcription factor TFIIB, cyclin-like domain
Gene3DG3DSA:1.20.5.6503.1E-8396445No hitNo description
PfamPF077412.8E-22406528IPR011665Brf1, TBP-binding domain
PRINTSPR006851.3E-5665685IPR000812Transcription factor TFIIB
Gene3DG3DSA:1.10.472.101.1E-17713812IPR013763Cyclin-like
SMARTSM003850.25725809IPR013763Cyclin-like
SuperFamilySSF479541.89E-17729813IPR013763Cyclin-like
PfamPF003824.2E-8738800IPR013150Transcription factor TFIIB, cyclin-like domain
CDDcd000435.72E-5740808No hitNo description
PRINTSPR006851.3E-5770789IPR000812Transcription factor TFIIB
SuperFamilySSF479547.56E-23822912IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.101.4E-22824912IPR013763Cyclin-like
CDDcd000435.99E-7824930No hitNo description
SMARTSM003858.5E-5827931IPR013763Cyclin-like
PfamPF003822.8E-10831902IPR013150Transcription factor TFIIB, cyclin-like domain
PRINTSPR006851.3E-5865881IPR000812Transcription factor TFIIB
Gene3DG3DSA:1.20.5.6503.4E-810441094No hitNo description
PfamPF077411.1E-2610551177IPR011665Brf1, TBP-binding domain
PROSITE profilePS5129416.24213081359IPR017930Myb domain
SuperFamilySSF466891.51E-1513091366IPR009057Homeodomain-like
SMARTSM007172.8E-1413121361IPR001005SANT/Myb domain
PfamPF002491.4E-1413131359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2113151371IPR009057Homeodomain-like
CDDcd001674.42E-1213161359No hitNo description
PROSITE profilePS5129431.83213601415IPR017930Myb domain
SuperFamilySSF466894.87E-3113621458IPR009057Homeodomain-like
SMARTSM007171.0E-1713641413IPR001005SANT/Myb domain
PfamPF139218.3E-1713681426No hitNo description
CDDcd001675.74E-1413681411No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2613721418IPR009057Homeodomain-like
PROSITE profilePS5129422.38914161466IPR017930Myb domain
SMARTSM007171.5E-1714161464IPR001005SANT/Myb domain
CDDcd001672.63E-1214191462No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2314191465IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0017025Molecular FunctionTBP-class protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1726 aa     Download sequence    Send to blast
MVWCNHCAKN VPGVRPYDGA LACDLCGRIL ENFNFSTEVT FVKNAAGQSQ ASGNVVRSVQ  60
SGVSSSRERR IRLARDEFMN LRDGLGLGDE RDDLIDMATR FFTMAVEQNF TKGRRTELVQ  120
CSCLYLTCRE KNIPFLLIDF SSYLRVSVYE LGAVYLQLCE MLYLTENKNY EKLVDPSIYI  180
PRFANVLLKG TYNKKVLKTA RNIIASMKRD WIQTGRKPSG ICGAALYTAA LAHGIKCSKT  240
DIVGIVHICE ATLTKRLNEF VDTEAGSLNV KELKKREKEM QKRPFATNQT SNKETVHCKH  300
QDRKPVNYGL CEECYSDFIS VSGGLVGGSD PPAFQRAEKD RMEKEKTARE ENEGGISSLN  360
HDEQQNSKRE PVYSSVSKSA KPCSEKGEGE KEEDDGEVSD ESGNFSDVSD TEVDCYINNE  420
EERRYKKVVW EEMNKEYIQE QADKEAALKA ANDALNASSS NLPEHARKLV EASKAAVAKS  480
RKEKQQKRAE EEKNAPPPAT TTESVRRMLD RKRLRGLIPD DVLDDLFDPS PTEKPAKIPR  540
TETVIEKTKE VKSNKQEDGE DEAEEDEEGY VESYDINTDF PDGEKLYEEE DEEEEEDEHS  600
SKSRVSYGSQ WFGLVDVLWR NISQTHLPPS PSSAIVAASA ITGNLGWGAM VWCNHCGKSV  660
SGIRPYDGAL ACNQCGRILE NFNFSTEVTF VKNAAGQSQA SGNVVRSVQS GVSSSRERRI  720
RLARDEFMNL RDGLGLGDER DDLIDMATRF FTMAVEQNFT KGRRTELVQC SCLYLTCREK  780
NIPFLLIDFS SYLRVSVYEL GAVYLQLCEM LYLTENRNYE KLVDPSIYIP RFSNALLKGK  840
QDKEVMRTAR DIIASMKRDW IQTGRKPSGI CGAALYTAAL AHGIKCSKTD IVGVVHICEA  900
TLTKRLNEFG DTEAGSLNVE ELSEREREMH KRSFATNQTS SKETVHCMHQ DSKPVNYGLC  960
EECYRDFISV SGGLVGGSDP PAFQRAEKER MEKEKAAREE NEGGISSLNH DEQLNSKREP  1020
VYSSVSKSAK PWSEKGDGEK DEDGSEVSDE SGNFSDVSDT EVDCYINNEE ERRYKKVVWE  1080
EMNKEYIKEQ ADKEAALKAA NDALNASSSN LPEHARKLVE ASRAAVAKSR KEKQQKRAEE  1140
EKNAPPPATA TEAVRRMLDK KRLSGLINYD LLDELFDTSP TEKPAKISRT ETVMEKMKEE  1200
KKEVKSNKQE DGENEEEDEA EEDQEGYVES YDINTDFPDG EKLYEEEDEE EEDEKMEDEC  1260
IESKQSTAVS PSSVSEGSSS SFLKSPGAVP SPATVSPTHS YARRTSGPMR RTKGGWTKEE  1320
DEILRQGVCR FKAKSWKKVA EVLPGRTEVQ CMHRWQKVLD PNLNKGHWTQ QEDETIIELV  1380
EKYGAKKWSL ISQSLPGRIG KQCRERWHNH LNPGINKEAW TPEEELALLN AHVIYGNKWA  1440
EIAKVLPGRT DNSIKNHWNS SLKKKSEFFS ANGGLPPTPK YATTKPTPAE PVMAVTTSAK  1500
NGVLDGATTQ FKKPDEEGKD QSNSSVPLQE IVAASPVTSV SEYTRSSPQL PNPENGYQRY  1560
YKPQREHYVA SEEDKQRMYG YEYGCSPSTP PVIFFTPPPP CRKEYNYGSG PTSLESFLRE  1620
AARTFQNMPS IIRKRPRKFV VDPDNNKTDE EEAAKEVVDE KVSPDCEEEE EEKQNNGTNA  1680
YYISPPYRIG SKRRAVLKSR QLEFITREAE KADDETKSSE KDKVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-59131314656158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-59131314656158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100250.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111710001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893940.0AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736045.10.0transcription factor IIIB 60 kDa subunit-like
RefseqXP_013736046.10.0transcription factor IIIB 60 kDa subunit-like
RefseqXP_013736047.10.0transcription factor IIIB 60 kDa subunit-like
RefseqXP_022572030.10.0transcription factor IIIB 60 kDa subunit-like
RefseqXP_022572031.10.0transcription factor IIIB 60 kDa subunit-like
TrEMBLA0A3P6A2Z70.0A0A3P6A2Z7_BRACM; Uncharacterized protein
STRINGBo3g062020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM279022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-158myb domain protein 3r-3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]