PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111777001
Common NameGSBRNA2T00111777001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 391aa    MW: 42958.5 Da    PI: 6.4064
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.5e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ +++++   +C++++ +lC +C  + H+       H++
  GSBRNA2T00111777001  4 MCDFCGDQRSMVYCRSDSACLCLSCDRSVHSAnalskrHSR 44
                         6*****************************65677777765 PP
2zf-B_box26.31.6e-084690441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                          +C++++ ++++  C + ++ lC++C  ++H++       H++++
  GSBRNA2T00111777001 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnstssndHKRQT 90
                         68*****************************88899999998876 PP
3CCT60.36.5e-21333376144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  GSBRNA2T00111777001 333 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 376
                          99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
CDDcd000211.97E-7447No hitNo description
SMARTSM003365.9E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5134391IPR000315B-box-type zinc finger
CDDcd000211.41E-54776No hitNo description
SMARTSM003360.274891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.338333375IPR010402CCT domain
PfamPF062031.1E-15333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGYMCDFCGD QRSMVYCRSD SACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNS TSSNDHKRQT ISCYSGCPSS SELASIWSFC SELAGESACE  120
QEMGMMNIDD DGQTKQNCNE DKKDETSSAA QATNASFAKR SPAQITSEKK LINITCCGFG  180
SGDYKLWPPT SCPLKNYHDV GVSEDDFYGN LGMDEVDLAL DNYEELFGTA FNTSVHLFGQ  240
GGVDSLFQKH QQAAAPEGGN LVQPAESNDD SFMSSKTEPI ICYTSKPAHS NISFSGVTGE  300
SSAGDFQECG ASSSVQLTGE PPWHPQTSQS VTRNNAVMRY KEKKKARKFD KRVRYASRKA  360
RADVRRRVKG RFVKAGEAYD YDPLTPTRSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111777001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373319e-81AC237331.1 Arabidopsis lyrata clone JGIFAFI-57H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134989.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_018512576.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3P6A8Q40.0A0A3P6A8Q4_BRACM; Uncharacterized protein
STRINGBra001264.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]