PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112032001
Common NameGSBRNA2T00112032001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 261aa    MW: 27856 Da    PI: 8.2672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112032001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++
  GSBRNA2T00112032001   4 SCNGCRVLRKGCSDDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q+++e+++ +e
  GSBRNA2T00112032001  94 QLCQAAVEAVMKGE 107
                          *******9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.3E-951260IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.2843109IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-244104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EMATDAATNG  120
QGPPLKMYDI RHISKDESSA AVAAAAATGS NDLKRPKPRR AKRVAGVAKP SESEEKEASH  180
VSSLSHQSEV VAAQEGESNI SEVMTFSPPA VQSSGEIKLD LTLGLEPVSH ACNVVPLKKR  240
KIGAFATCQE DIPCKTELKL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154163RPKPRRAKRV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112032001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134682.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-153LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3P6AA570.0A0A3P6AA57_BRACM; Uncharacterized protein
STRINGBo3g055690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-140LOB domain-containing protein 41
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]